YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15131669
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	117	0.98
Transmembrane Helix	118	140	0.89
Non-Cytoplasmic	141	156	0.94
Transmembrane Helix	157	178	0.89
Cytoplasmic	179	187	0.80
Transmembrane Helix	188	208	0.86
Non-Cytoplasmic	209	261	0.85
Transmembrane Helix	262	284	0.88
Cytoplasmic	285	334	0.96
Transmembrane Helix	335	357	0.81
Non-Cytoplasmic	358	373	0.88
Transmembrane Helix	374	396	0.92
Cytoplasmic	397	513	0.97
Transmembrane Helix	514	531	0.96
Non-Cytoplasmic	532	580	0.64
Transmembrane Helix	581	596	0.34
Cytoplasmic	597	640	0.67
Transmembrane Helix	641	663	0.87
Non-Cytoplasmic	664	713	0.82
Transmembrane Helix	714	735	0.84
Cytoplasmic	736	875	0.90
Transmembrane Helix	876	895	0.86
Non-Cytoplasmic	896	913	0.66
Transmembrane Helix	914	935	0.68
Cytoplasmic	936	944	0.47
Transmembrane Helix	945	970	0.75
Non-Cytoplasmic	971	998	0.51
Transmembrane Helix	999	1027	0.68
Cytoplasmic	1028	1076	0.51
Transmembrane Helix	1077	1097	0.72
Non-Cytoplasmic	1098	1117	0.39
Transmembrane Helix	1118	1144	0.83
Cytoplasmic	1145	1194	0.38
Transmembrane Helix	1195	1217	0.79
Non-Cytoplasmic	1218	1226	0.35
Transmembrane Helix	1227	1249	0.67
Cytoplasmic	1250	1336	0.53
Transmembrane Helix	1337	1358	0.89
Non-Cytoplasmic	1359	1429	0.59
Transmembrane Helix	1430	1454	0.86
Cytoplasmic	1455	1602	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHQRQQQED HANEANYARG TRPPISGEGP TSQPNSSKQT VLSWQAAIDA ARQAKAAQTM  60
   61 STSAPPPVGS LSQRKRQQYA KSKKQGNSSN SRPARALFCL SLNNPIRRAC ISIVEWKPFD 120
  121 IFILLAIFAN CVALAIYIPF PEDDSNSTNH NLEKVEYAFL IIFTVETFLK IIAYGLLLHP 180
  181 NAYVRNGWNL LDFVIVIVGL FSVILEQLTK ETEGGNHSSG KSGGFDVKAL RAFRVLRPLR 240
  241 LVSGVPSLQV VLNSIIKAMV PLLHIALLVL FVIIIYAIIG LELFIGKMHK TCFFADSDIV 300
  301 AEEDPAPCAF SGNGRQCAVN GTECRSGWVG PNGGITNFDN FAFAMLTVFQ CITMEGWTDV 360
  361 LYWMNDAMGF ELPWVYFVSL VIFGSFFVLN LVLGVLSGEF SKEREKAKAR GDFQKLREKQ 420
  421 QLEEDLKGYL DWITQAEDID PENEEEGGEE GKRNTSMPTS ETESVNTENV SGEGETQGSC 480
  481 GSLCQAISKS KLSRRWRRWN RFNRRRCRAA VKSVTFYWLV IVLVFLNTLT ISSEHYNQPD 540
  541 WLTQIQDIAN KVLLALFTCE MLVKMYSLGL QAYFVSLFNR FDCFVVCGGI TETILVELEL 600
  601 MSPLGVSVFR CVRLLRIFKV TRHWTSLSNL VASLLNSMKS IASLLLLLFL FIIIFSLLGM 660
  661 QLFGGKFNFD ETQTKRSTFD NFPQALLTVF QILTGEDWNA VMYDGIMAYG GPSSSGMIVC 720
  721 IYFIILFICG NYILLNVFLA IAVDNLADAE SLNTAQKEEA EEKERKKIAR KESLENKKNN 780
  781 KPEVNQIANS DNKVTIDDYQ EETEDKDPYP PCDVPVGEEE EEEEEEPEVP AGPRPRRISE 840
  841 LNMKEKIVPI PEGSAFFILS KTNPIRVGCH KLINHHIFTN LILVFIMLSS AALAAEDPIR 900
  901 SHSFRNTILG YFDYAFTAIF TVEILLKMTT FGAFLHKGAF CRNYFNLLDM LVVGVSLVSF 960
  961 GIQSSAISVV KILRVLRVLR PLRAINRAKG LKHVVQCVFV AIRTIGNIMI VTTLLQFMFA1020
 1021 CIGVQLFKGK FYRCTDEAKS NPEECRGLFI LYKDGDVDSP VVRERIWQNS DFNFDNVLSA1080
 1081 MMALFTVSTF EGWPALLYKA IDSNGENAGP VYNHRVEISI FFIIYIIIVA FFMMNIFVGF1140
 1141 VIVTFQEQGE KEYKNCELDK NQRQCVEYAL KARPLRRYIP KNPYQYKFWY VVNSSPFEYM1200
 1201 MFVLIMLNTL CLAMQHYEQS KMFNDAMDIL NMVFTGVFTV EMVLKVIAFK PKGYFSDAWN1260
 1261 TFDSLIVIGS IIDVALSEAD PTESESLPLP TATPGNSEES NRISITFFRL FRVMRLVKLL1320
 1321 SRGEGIRTLL WTFIKSFQAL PYVALLIAML FFIYAVIGMQ MFGKVAMRDN NQINRNNNFQ1380
 1381 TFPQAVLLLF RCATGEAWQE IMLACLPGKL CDPDSDYNPG EEYTCGSNFA IVYFISFYML1440
 1441 CAFLIINLFV AVIMDNFDYL TRDWSILGPH HLDEFKRIWS EYDPEAKGRI KHLDVVTLLR1500
 1501 RIQPPLGFGK LCPHRVACKR LVAMNMPLNS DGTVMFNATL FALVRTALKI KTEGNLEQAN1560
 1561 EELRAVIKKI WKKTSMKLLD QVVPPAGGQC GLCFLSPSRS RS