YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18568416
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSPTSKLVE FRCLIALAIY LRALEQSIQH CHCVHGYRNN TESAELVSHY ESSLSLPDIL  60
   61 PIPSKTYDKN RAPKLLGQPT VVYLHVTVLS LDSINEESMT YVTDIFLAQS WRDPRPRLPE 120
  121 NMSEQYRILD VDWLHSIWRA DCFFKNAKKV TFHEMSIPNH YIWVYHDKTL FYMSKLTLVL 180
  181 WCALKFESYP HDTQICSMMI ESLSHTVEDL VFIWNMTDPL VVNTEIELPQ LDISNNYTTD 240
  241 CTIEYSTGNF TCLAIVFNLR RRLGYHLFHT YIPSALIVVM SWISFWIKPE AIPARVTVGV 300
  301 TSLLTLATQN TQSQQSLPPV SYVKAIDIWM SSCSVFVFLS LMEFAVVNNF MGPVATKAMK 360
  361 GYSDENISDL DDLKSALQHH RESIIEPQYD TFCHGHATAI YIDKFSRFFF PFSFFILNIV 420
  421 YWTTFL

Type	Start	End	Confidence
Cytoplasmic	1	264	0.51
Transmembrane Helix	265	286	0.90
Non-Cytoplasmic	287	327	0.50
Transmembrane Helix	328	350	0.80
Cytoplasmic	351	404	0.73
Transmembrane Helix	405	425	0.86
Non-Cytoplasmic	426	426	0.71