YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FAD2_VERFO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAGGRMSVP PPPKKLESEV LKRVPHSKPP FTLGQLKKAI PPHCFQRSVL RSFSYVVYDL  60
   61 TVAFIFYYIA TNYFHLLPQP LSYVAWPIYW ALQGCVLTGV WVIAHECGHH AFSDYQLLDD 120
  121 IVGLVLHSCL LVPYFSWKHS HRRHHSNTAS LERDEVFVPK KKSSIRWFSK YLNNPPGRLF 180
  181 TLTITLTLGW PLYLAFNVSG RPYDRFACHY DPYGPIYTDR ERTEIYISDA GVLAVTFGLY 240
  241 RLAAAKGLAW VICVYGVPLL IVNAFLVMIT YLQHTHPSIP HYDSSEWDWL RGALATVDRD 300
  301 YGILNKVFHN ITDTHVAHHL FSTMPHYHAM EATKAIKPIL GEYYQFDGTP FYKAMWREAK 360
  361 ECIYVEADDG DESKGVYWYN KKF

Type	Start	End	Confidence
Cytoplasmic	1	54	0.84
Transmembrane Helix	55	76	0.82
Non-Cytoplasmic	77	85	0.68
Transmembrane Helix	86	105	0.85
Cytoplasmic	106	175	0.53
Transmembrane Helix	176	196	0.81
Non-Cytoplasmic	197	224	0.50
Transmembrane Helix	225	243	0.44
Cytoplasmic	244	247	0.59
Transmembrane Helix	248	272	0.86
Non-Cytoplasmic	273	383	0.67