YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28400772
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLSCLALPIL FTSIVKHNHW PFGDQACIVL PSLILLNMYS SILLLATISA DRFLLVFKPI  60
   61 WCQKFRRPGL AWMACGVTWV LALLLTIPSF VFRRIHKDPY SDSILCNIDY SKGPFFIEKA 120
  121 IAILRLMVGF VLPLLTLNIC YTFLLIRTWS RKATRSTKTL KVVMAVVTCF FVFWLPYQVT 180
  181 GVILAWLPRS SSTFQSVERL NSLCVSLAYI NCC

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.92
Transmembrane Helix	27	48	0.88
Cytoplasmic	49	68	0.87
Transmembrane Helix	69	91	0.92
Non-Cytoplasmic	92	120	0.97
Transmembrane Helix	121	145	0.89
Cytoplasmic	146	161	0.89
Transmembrane Helix	162	186	0.86
Non-Cytoplasmic	187	213	0.97