YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2225995
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHSLRYFYT AVSRPGLGEP RFIAVGYVDD TEFVRFDSDA ENPRMEPRAR WMEREGPEYW  60
   61 EEETQIAKGH EQIYRVDLRT LRGYYNQSEG GSHTIQEMYG CDVGSDGSLL RGYRQDAYDG 120
  121 RDYIALNEDL KTWTAADFAA QITRNKWERA RYAERLRAYL EGTCVESLRR YLELGKETLL 180
  181 RSDPPEAHVT LHPRPEGDVT LRCWALGFYP ADITLTWQLN GEDLTQDMEL VETRPAGDGT 240
  241 FQKWASVVVP LGKEQNYTCR VEHEGLPKPL SQRWEPSPST DSNMETTVIY VILGAVAMIG 300
  301 AVAIIGAMVA VVRRRKRNTG GKGEYAPAPG RDSSQSSDVS LPDCKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	287	0.98
Transmembrane Helix	288	312	0.92
Cytoplasmic	313	346	0.99