YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2266751
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRRLARGCW SAFWDYETPK VIVVRNRRLG FVHRMVQLLI LLYFVWKSYQ DSETGPESSI  60
   61 ITKVKGITMS EDKVWDVEEY VKPPEGGSVV SIITRIEVTP SQTLGTCPES MRVHSSTCHS 120
  121 DDDCIAGQLD MQGNGIRTGH CVPYYHGDSK TCEVSAWCPV DDGTSDNHFL GKMAPNFTIL 180
  181 IKNSIHYPKF KFSKGNIARQ KSDYLKHCTF DQDSDPYCPI FRLGFIVEKA GENFTELAHK 240
  241 GGVIGVIINW NCDLDLSESE CNPKYSFRRL DPKYDPASSG YNFRFAKYYK INGTTTTRTL 300
  301 IKAYGIRIDV IVHGQAGKFS LIPTIINLAT ALTSIGVGSF LCDWILLTFM NKNKLYSHKK 360
  361 FDKVRTPKHP SSRWPVTLAL VLGQIPPPPS HYSQDQPPSP PSGEGPTLGE GAELPLAVQS 420
  421 PRPCSISALT EQVVDTLGQH MGQRPPVPEP SQQDSTSTDP KGLAQL

Type	Start	End	Confidence
Non-Cytoplasmic	1	327	0.90
Transmembrane Helix	328	349	0.68
Cytoplasmic	350	466	0.55