YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2266749
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRRLARGCW SAFWDYETPK VIVVRNRRLG FVHRMVQLLI LLYFVWYVFI VQKSYQDSET  60
   61 GPESSIITKV KGITMSEDKV WDVEEYVKPP EGGSVVSIIT RIEVTPSQTL GTCPESMRVH 120
  121 SSTCHSDDDC IAGQLDMQGN GIRTGHCVPY YHGDSKTCEV SAWCPVEDGT SDNHFLGKMA 180
  181 PNFTILIKNS IHYPKFKFSK GKIASQKSDY LKHCTFDQDS DPYCPIFRLG FIVEKAGENF 240
  241 TELAHKGGVI GVIINWNCDL DLCESECNPK YSFRRLDPKY DPASSGYNFR FGKYYKINGT 300
  301 TTTRTLIKAY GIRIDVIVHG QAGKFSLIPT IINLATALTS IGVGSFLCDW ILLTFMNKNK 360
  361 LYSHKKFDKV VDTLGQHMGQ RPPVPEPSQQ DSTSTDPKGL AQL

Type	Start	End	Confidence
Cytoplasmic	1	29	0.95
Transmembrane Helix	30	50	0.89
Non-Cytoplasmic	51	333	0.99
Transmembrane Helix	334	353	0.73
Cytoplasmic	354	403	0.73