YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|6650634
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTNLYRLVF SHVRGMLVPV SEHCTVGNTS CGRTRGQARS GARATSLSVA PNALAWALML  60
   61 ACAGLPLVTH AQGLVPQGQT QVLQGGNKVP VVNIANPNSG GVSHNKFQQF NVANPGVVFN 120
  121 NGLTDGVSRI GGALTKNPNL TRQASAILAE VTGTSPSRLA GTLEVYGKGA DLIIANPNGI 180
  181 SVNGLSTLNA SNLTLTTGRP SVNGGRIGLD VQQGTVTIER GGVNVTGLGY FDVVARLVKL 240
  241 QGAVSSEQGK PLADIAVVAG ANRYDHATRR ATPIAAGARD AAAGAYAIDG TAAGAMYGKH 300
  301 ITLVSSDSGL GVRQLGSLSS PSAITVSSQG EIALGDATVQ RGPLSLKGAG AVSAGKLASG 360
  361 GAVRVAGGGA VKIASASSVG NLAVQGGGKV QATLLNAGGT LQVSGRQAVQ LGTASSRQVL 420
  421 SVNAGGALKA DQLSATGRLE VDGKQAVTLG SAASRNALSV RAGGALKADK LSATGRLEVG 480
  481 GKQAVTLGSA ASGDALSVSA GAALRADKLS ATGRLDVDGK QAVTLGSVAS DGALSVSAGG 540
  541 NLQAKQLVSN AGLDVRGQRE VSLEAASSVR GMTVAAAGTL AARNLQSQGA IRVQGGEAVS 600
  601 VANANSDAEL HVSGRGQVDL GDLSAARGAD ITGEQRVSIG RAHSDGDVNV AARGALSIDS 660
  661 MTALGAIGVQ AGDSVSAKDM RSRGAVTVSG GGSVNLGDVQ SDGQVRATSA GAMTVRDAAA 720
  721 AADLALQAGG ALQAGFLKSA GAMTVNGRDA VRLDGAQAGG QLRVSSDGQA ALGSLAAKGA 780
  781 LTVSAARAAT VAELKSLDSI SVTGGERVSV QSVNSASRVA ISAHGALEVG KVSAKSGIGI 840
  841 EGWGAVAVDS LGSDGAISVS GRDAVRVDHA RSLADISLGA EGGATLGAVE AAGSIDVRGG 900
  901 STVAANSLRA NRDVRVSGKD AVRVTAATSG GGLHVSSGRQ LDLGAVQARG ALALDGGAGV 960
  961 ALQSAKAGGT LHVQGGEHLD LGTLAAVGAV DVNGAGDVRV AKLVSDAGAD LQAGRSMTLG1020
 1021 TVDTTGDLQA RAQQALELGS VKTEGGLQAA AGGALSLAAA EVAGALELSG HGVTVDRASA1080
 1081 GRARIDSTGS VGIGALKAGA VEAASPRRAR RALRQDFFTP GSVVVRAQGN VTVGRGDPHQ1140
 1141 GVLAQGDIVM DAKGGTLLLR NDVLTENGTV TISADSAVLE HSTIESKISQ SALAAKGDKG1200
 1201 KPAVSVKVAK KLFLNGTLRA VNDNEETMPG RQIDVVDGRP QITDAVTGEE RKDESVVSDA1260
 1261 ALVADGGPIV VETGELVSHA GGIGNGRNKG DGADVTVRTT GNVMNKGYIS AGKQGVLEVG1320
 1321 GTLTNEFLVS SDGTQRIEAQ RIENRGTFQS QAPAGTAGAL VVKAAEAIVH DGVMATEGEM1380
 1381 QIAGKGGGSP AVTAGAKATT SANKLSADVA SWDNAGSLDI KKGGAQVTVA GRYAEHGKVS1440
 1441 IQGDYTVSAD AIALAAQITQ RGGAADLTSR HDTRFSNNIR LMGPLQVSAG GAVSNTGNLK1500
 1501 VREGVRVTAA SFDNEAGAEV MAKSAALTTS GAVRNAGKMQ VKEAATIVAA SVSNPGTFTA1560
 1561 GKDLTVTSRG GFDNNGKMES NKDIVIKTEQ FGNAGILDAK HDLTVTASGQ ADNRGSLKAG1620
 1621 HDFTVQAQRI DNSGTMAAGH DATLKAPHLR NTGQIVAGHD IHIINSAKLE NTGRVDARND1680
 1681 LVLDVKDFTN TGSLYAEHDA TLTLAQGTQR DLVVDQDHIL PVAEGTLRVK AKSLTTEIET1740
 1741 GNSGSLIAEV QENIDNKQAI VVGKDLTLSS AHGNVANEAN ALLWAAGDLT VKAQNITNER1800
 1801 AALIEAGGNA RLTAAVALLN KLGRIRAGED MHLDAPRIEN TAKLSGEVQR KGVQYVGGGT1860
 1861 YGRWSGIGYV NYHLSSGSGA IAAPWYGSDL TAEQSLIEVG KDLYLNADAR KDEHRRLLNE1920
 1921 GVIQAGGHGH IGGDVDNRSV MRTVSAMEYF KTPLPVSLTA LDNRAGLSPA TWNFNSTYEL1980
 1981 LDYLLDQNRY EYIWGVYPTY TEWSVNTLKN LNLGYQAKPA PTAPPMPKMP TLDLRGHTQE2040
 2041 SAEGRKIFAE YKKQQGEYEK AKAAVQAVEA YGEATRRVHD QLGQRYGKAL GGMDAETKEV2100
 2101 DGIIQAFAAD LRTVYAKQAD QASIDAETDK VAQRYKSQID AVQLEAIQPG RVMLAKALSA2160
 2161 ALGADWRALG HAELMQRWKD FKAGKRGANI AFYPKEQTVL AAGAGLTLSN GAVHNGENAA2220
 2221 QNRGRPENLK IGAHSATSVG GSFDALRDVG LEKRLDIDDA LAAVLVNPHI FTRIGAVQAS2280
 2281 LSDAAAGPAL ARQARQAPGT DGMVDARGLG SADALASLAS LDAAQGLEVS GRRNAQVADA2340
 2341 RLAGPSAVAA PAVGAADVGV EPVAGDQVDQ PVVAVGLEQP AAAVRVAPPA VALPRPLFET2400
 2401 RIKFIDQSKF YGSRYFFEQI GYQPDRAARV AGDNYFDTTL VREQVRRALG GYESRLPVRG2460
 2461 VALVAKLMDS AGTVGKALGL KVGVAPTAQQ LKQADRDFVW YVDTVIDGQK VLAPRLYLTE2520
 2521 ATRQGITDQY AGGGALIASG GDVNVDTNGH DVSSVNGLIQ GKRVKVDAGK GKVLVADNKG2580
 2581 MGSGIEADDE VDVSAQDIDI EGGKLRGKDV KLKADTVKVA TSMRYDDKGR LAARGDGALD2640
 2641 AQGGQLHIEA KRLETAGATL KGSKVKLDVD DVKLGGVYEA GSSYENKSST PLGSLFAILS2700
 2701 STTETNQSAR ANHYGTRIEA GTLEGKMQNL EIEGGSVEAA HTDLSVARDA RFKAAADFEH2760
 2761 AEHEKDVRQL FVSAKAGAGG YEAGFSLGSE KGLEAHAGRG KTAGAEVRVG YQASHEQSSE2820
 2821 TEKSYRNANL NFGGSSVEAG NVLDIGGADI NRNRYGGAAE GKAGAEEALR MRAKKVESTK2880
 2881 YVSEQTSQSS GWSVEVGATG SARSSVLTPA TRLGDSVAQN VEDGREIRGE LMAAQAAAEA2940
 2941 TQLVTADTAA LAVSLGISAD FDSSQSRSTS QNTQYLGGNL SIEATEGDAT LVGAKFSGGD3000
 3001 QVSLKAAQSV NLMAAESTYE SHSESHNFHA SADANLGANA VQGAVGLGLT AGMGTSHQIT3060
 3061 SETGKTYAGS SVAAANVSID AGKDLNLSGS RVRGQRVVLG VEGDINTTSK QDERNYNSSG3120
 3121 GGWDGSAGVA IQNRTLVAPV GSAGFNFNTE HDNSRLTNDG AAGVVASDGL TGHVKGDANL3180
 3181 TGATIADLSG EGNFKVDGAV NAQNLKDYRD KDGGSGGLTV GISSTTLAPT VGVAFGRVAG3240
 3241 EDYQAEQRAT IDVGQTKDPS RLQVGGGIKG ALNEDAAKAT VVQRNKHWAG GGSEFSVAGK3300
 3301 SPKKKNQVRP VETPTPTPDV VDGPPSRPAT PPASPQPIRA TVEISSPPPT SVAKVEVVPR3360
 3361 PKVETAQPLP PRPVPAKAVP VVPPKVEVAK VEVVPRPKVE TAQPLPPRPV VAEKVTTPAV3420
 3421 QPQLAKVETV QPVKPETAKP LPKPLPVAKV QEAPPPVVAT TQPLPPVKAQ QATPGPVAEA3480
 3481 GKATVTTVQV QSAPAKPAPV VKQAQPAPAP APAPAPAPKP KPKPKAERPK PGKTTPLSGR3540
 3541 HVVQQQVQVL QRQASDINNT KSLPGGKLPK PVTVKLTDEN GKPQTYTINR REDLMKLNGK3600
 3601 VLSTKTTLGL EQTFRLRVED IGGKNYRVFY ETNK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle