YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13177565, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDFYFLIRW LCKVIVKSVF RDVNVINPEN VPLYGSVIFV GNHNNQFIDA CVLIANIPRQ  60
   61 VKFIVAEKSM RRAVIGKLAS VIGCISVKRP QDLKFKGIGH ICWNKGDVKI TGINTRFRLD 120
  121 VQIGDKLLIQ NKMFPVVKIE SETELLIQEV INIECEDKMN GVPFKIIPKI NQTEVYNLVT 180
  181 NSLKNGDTIG IFPEGGSHDR TNLLPLKPGV AIMTLCALAD GIEDVSIIPV GLSYSKLYQL 240
  241 QGCATLFYGN AIIISQDLCK EYNNNNREAI SKLLSKIEEG MRSCMLTSKD HETSRCIELC 300
  301 VSLYTPERMT ISKNKIYNNL QLFCKMFWKF GNSKVIENLS YELKCYEKLL QANKIKDDEV 360
  361 WMLKQSTSAA TLKFIEHICT FIFCVIFGMT FSLLWLPLVL ISIYLAERHR KAALRNSTIK 420
  421 IQGGDVVSSY KVLVLIVLLP TFNIVYGLLF SIYLYHSWLK RILFVFLSMC ILPICYYINL 480
  481 NYAVQIPSLL RQMKILLKVI CGKINVWRDN ERELISTRHE LQLKVRDLVS TLGPDVSDDF 540
  541 LEQLYRNIPK FVVDVDTKRL IRGKDEFLPI LQRSQLEYKE EIL

Type	Start	End	Confidence
Non-Cytoplasmic	1	377	0.73
Transmembrane Helix	378	406	0.81
Cytoplasmic	407	426	0.72
Transmembrane Helix	427	454	0.79
Non-Cytoplasmic	455	461	0.59
Transmembrane Helix	462	484	0.89
Cytoplasmic	485	583	0.73