YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG30502-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIDMDIPKE AESNDKFIVK YRQQYYDLSR FMHKHPGGIN TLKGLNSGDM TARFLKAPPH  60
   61 SDAAMYLMRE YKIDPEDSRK PKSSQRETLH HDEDGTLRQR PRETEDKNNN QVDDSMEHLV 120
  121 DWSKAMLPQI ANITDCYDEW VHKPVDRPLR LFDPWYLEMC TKTPWWLVPL FWIPVIVKCA 180
  181 VEEFTTAWQD SNQLAVFSGY FLFGVLLWSF LEYTLHRWVF HVKLSNKSGS WLCTFHFMIH 240
  241 GLHHKVPFDP MRLVFPPLPG AVLAAVIYTP LSFVLSHPRV ILSGALAGYL CYDMMHYYLH 300
  301 YGNPSLWAFV HMKRYHHHHH FSHQTLGYGI SSPLWDVVFK TRIHLRKLRY QLRWS

Type	Start	End	Confidence
Cytoplasmic	1	164	0.74
Transmembrane Helix	165	181	0.64
Non-Cytoplasmic	182	193	0.71
Transmembrane Helix	194	215	0.87
Cytoplasmic	216	227	0.68
Transmembrane Helix	228	244	0.82
Non-Cytoplasmic	245	252	0.78
Transmembrane Helix	253	274	0.87
Cytoplasmic	275	279	0.80
Transmembrane Helix	280	300	0.86
Non-Cytoplasmic	301	319	0.89
Transmembrane Helix	320	339	0.84
Cytoplasmic	340	355	0.88