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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|18447422
Protein type: Transmembrane
Type Confidence: 0.65
Topology Confidence: 0.31
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDEDVALQK LAISSFDRMV LKNIQPLEYS NEAKHFMPWR IISTLLMTQP RAYLQERFAV  60
   61 LLERETIVTP RLVNVIISHL STSMATDAWG LLLFLSSRIT NNMDALIGIF NGLSSYNMKS 120
  121 NQFLALQLIT GCLRNFSKPA LNQLFQKLLN ALRTGSIWLG IISSAVNLLN QIHHLSTSQS 180
  181 PTIASEMPYW QLSLLEDLVE GILSSAQNFQ EEYARLQCLL GAYTELIVMV PQDVDNRIVS 240
  241 IVFKYLQECT KLCESEFDSD NERMTNWMIV IAGRLSLRDN HLANSASKLY ITILTKNDRP 300
  301 QIINTTLIAL NDLGKKHPSI LESNFQAILS KLQSKFAMTR VRTFRCVKDV ILSGNIKLKG 360
  361 PILISMLAAL VDESAEVARE ADAFFTRYKK LYNKMLFDHC LKECPFDLND QAILRGVRTN 420
  421 GNYKSPLKGS QMAKKRRLLY NHIMSSMDEN VLLLYFGQLK LLAEKTRDQA FINNPDALIV 480
  481 VQDMLFIMRR ICYCTKGMGK EKNSRGEGDN IDEGEDASSE PATPPTRPEA GEATSRGRGR 540
  541 KADMSEEPLK QLERCLRFVE ETHRNIVPVM SPELSHNFES FCRAMAMRFP NYIEFAQPAQ 600
  601 FWRQFRSSAK APRASRSKRR RMEEGEVESH EEHESESDSD SELPLDRHKT TPTASRLSQR 660
  661 KTSCDMLVTE LIFQPPDW

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle