YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37932139, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	91	0.97
Transmembrane Helix	92	113	0.84
Non-Cytoplasmic	114	122	0.73
Transmembrane Helix	123	146	0.70
Cytoplasmic	147	166	0.64
Transmembrane Helix	167	184	0.91
Non-Cytoplasmic	185	191	0.52
Transmembrane Helix	192	211	0.80
Cytoplasmic	212	217	0.54
Transmembrane Helix	218	235	0.33
Non-Cytoplasmic	236	240	0.51
Transmembrane Helix	241	263	0.68
Cytoplasmic	264	288	0.69
Transmembrane Helix	289	308	0.64
Non-Cytoplasmic	309	361	0.78
Transmembrane Helix	362	381	0.79
Cytoplasmic	382	432	0.75
Transmembrane Helix	433	455	0.74
Non-Cytoplasmic	456	458	0.49
Transmembrane Helix	459	478	0.87
Cytoplasmic	479	491	0.70
Transmembrane Helix	492	523	0.82
Non-Cytoplasmic	524	676	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTLENEVTF RKQAEVNQNL EAQFDSSSTD FILITDHRTS KSKSLEQLEA SKESKNPESC  60
   61 CSRYARNIFR KKTLLKRLPF LTWLPHYNRQ DCIGDLIAGF TVGLTVIPQG LAYSGVVGLP 120
  121 PEYGLYGSFM GCFVYVLLGT CKDSTIGSTA VASLMTFQFA QGSWQRSVLL TFLTGIIEIL 180
  181 MAIFKLGCLV EFVSGPVSAG FTSAVALIVS TSQMRSMLGV KSDGGSFLAT WISMFRDIEN 240
  241 VRVADTCLGF GCVILLLAMR SLGKFTIGPK DESRRNGFQR VVNTVIKFLS TSRNASVVIL 300
  301 FTAVTMYLDA NGTNPFRLTG NIPKGMPTPS LPPFSIEPQP GNETAGIPAV EGQTFPEMVQ 360
  361 SLGYGLVIVP LMALLETMSV CKAFAKGKQI DITQEMIACG VGNIATSLFS GYRCNGGLAR 420
  421 SAVNNASGCR TNMSNLYIGV IVVLALNFLT EYFAFIPKAV LAAIIISAVI FQVQYQVVTP 480
  481 MWRSKRSDLV PGILAFVTCL VLPLEIGIMV AIGVNLLFIL YYAARPKVTL EQLETQQGIR 540
  541 FVKITPDRCL IFPSVEFVRN MVLKLGSKST LPVVIDCTYI YAADFTAAKV ISSIVDDFRR 600
  601 RQQKIIFFNL KPSVVSVFEG LNTRLVLCYN THALNQELRP DEPDLSRSVD SLDHAESGNG 660
  661 TSECVSMAST LSLARS