YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7839365
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFSSPLFSP VNFALNPNPQ IHPKCTKPNR RNFSVCAIPP LSTATDISAV TGPLDGTTLA  60
   61 VLGGGSVAAL AAILSLADPE RRRQLQAEEV GGGDKEVVRE YFNNNGFQRW KKIYGDTDDV 120
  121 NKVQLDIRLG HSKTVENVMK MLTEEGSLQG VTVCDAGCGT GCLSIPLAKE GAVVSASDIS 180
  181 ASMVAEAQKQ AQEELFKDKD DQSPAPVMPK FEVKDLESLD GKYDTVVCLD VMIHYPQSKA 240
  241 DGMIAHLASL AENRLILSFA PKTFYYDLLK RIGELFPGPS KATRAYLHAE ADVERALQKA 300
  301 GWKIRKRGLI ATQFYFAKLI EAVPA

Type	Start	End	Confidence
Cytoplasmic	1	55	0.44
Transmembrane Helix	56	77	0.67
Non-Cytoplasmic	78	325	0.59