YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SURF1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSLSKILT RSNTKRYWCS TTTSISASPS LPKQFWSRHF SAVADSSSSS SAALGSQSSS  60
   61 SAPPQENKRG SKWSQLLLFL PGAITFGLGS WQIVRREEKF KTLEYQQQRL NMEPIKLNID 120
  121 HPLDKNLNAL EFRRVSCKGV FDEQRSIYLG PRSRSISGIT ENGFFVITPL MPIPGDLDSM 180
  181 QSPILVNRGW VPRSWREKSQ ESAEAEFIAN QSTKAKSPSN EPKSWWKFWS KTPVITKEHI 240
  241 SAVKPVEVVG VIRGGENPSI FVPSNDPSTG QWFYVDVPAM ARAVGLPENT IYVEDVHEHV 300
  301 DRSRPYPVPK DINTLIRSKV MPQDHLNYSI TWYSLSAAVT FMAYKRLKAK PVRR

Type	Start	End	Confidence
Cytoplasmic	1	72	0.49
Transmembrane Helix	73	94	0.47
Non-Cytoplasmic	95	354	0.90