YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18378127
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLGAVKMEG HEHTDWSTYY GEPECYTSVG NMNAGLGMNS MNTYMSMSGM STTANMTANS  60
   61 MNMSYVNTGM SPSMTGMSPG TGAMNGMGAG MTAMSAALSP SMSPMTAQPA SMNALTSYSN 120
  121 MNAMSPIYGQ SNINRSRDPK TYRRSYTHAK PPYSYISLIT MAIQQSPSKM LTLAEIYQWI 180
  181 MDLFPFYRQN QQRWQNSIRH SLSFNDCFVK VPRSPDKPGK GSFWTLHPDS GNMFENGCYL 240
  241 RRQKRFKCDK KMKEPGRKSG DGGSSNSSSE SCNGNESPLS NSSSSDHKRS LSDMKTSQAL 300
  301 SPEHTAASPV TQGQHLMSQH HSVLAHEAHL KPEHHYSFNH PFSINNLMSS EQQHHKMDLK 360
  361 TYEQVMHYSG YGSPMAGPLS MGSMAGKAGL DSSSIPDTTY YQGVYSRPIM NSS

Type	Start	End	Confidence
Cytoplasmic	1	78	0.43
Transmembrane Helix	79	98	0.59
Non-Cytoplasmic	99	413	0.74