YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18377815, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTCLIFFLY TTILQYYFHF SVSSLSTPLL LHLSHSLSTS KHSSSPLHLL KSSSSRSSAR  60
   61 FRRHHHKQQQ QQLSLPISSG SDYLISLSVG SSSSAVSLYL DTGSDLVWFP CRPFTCILCE 120
  121 SKPLPPSPPS SLSSSATTVS CSSPSCSAAH SSLPSSDLCA ISNCPLDFIE TGDCNTSSYP 180
  181 CPPFYYAYGD GSLVAKLYSD SLSLPSVSVS NFTFGCAHTT LAEPIGVAGF GRGRLSLPAQ 240
  241 LAVHSPHLGN SFSYCLVSHS FDSDRVRRPS PLILGRFVDK KEKRVGTTDD HDDGDDEKKK 300
  301 KNEFVFTEML ENPKHPYFYS VSLQGISIGK RNIPAPAMLR RIDKNGGGGV VVDSGTTFTM 360
  361 LPAKFYNSVV EEFDSRVGRV HERADRVEPS SGMSPCYYLN QTVKVPALVL HFAGNRSSVT 420
  421 LPRRNYFYEF MDGGDGKEEK RKIGCLMLMN GGDESELRGG TGAILGNYQQ QGFEVVYDLL 480
  481 NRRVGFAKRK CASLWDSLK

Type	Start	End	Confidence
Cytoplasmic	1	12	0.50
Transmembrane Helix	13	33	0.53
Non-Cytoplasmic	34	499	0.97