YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5007025
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	488	0.79
Transmembrane Helix	489	509	0.82
Cytoplasmic	510	526	0.66
Transmembrane Helix	527	547	0.90
Non-Cytoplasmic	548	565	0.63
Transmembrane Helix	566	586	0.94
Cytoplasmic	587	592	0.70
Transmembrane Helix	593	615	0.86
Non-Cytoplasmic	616	651	0.71
Transmembrane Helix	652	672	0.83
Cytoplasmic	673	709	0.80
Transmembrane Helix	710	730	0.61
Non-Cytoplasmic	731	731	0.31
Transmembrane Helix	732	754	0.68
Cytoplasmic	755	1325	0.52
Transmembrane Helix	1326	1350	0.67
Non-Cytoplasmic	1351	1387	0.58
Transmembrane Helix	1388	1405	0.75
Cytoplasmic	1406	1422	0.72
Transmembrane Helix	1423	1441	0.71
Non-Cytoplasmic	1442	1460	0.65
Transmembrane Helix	1461	1495	0.57
Cytoplasmic	1496	1496	0.35
Transmembrane Helix	1497	1519	0.80
Non-Cytoplasmic	1520	1547	0.66
Transmembrane Helix	1548	1564	0.57
Cytoplasmic	1565	1586	0.80
Transmembrane Helix	1587	1612	0.83
Non-Cytoplasmic	1613	1632	0.80
Transmembrane Helix	1633	1657	0.86
Cytoplasmic	1658	1667	0.66
Transmembrane Helix	1668	1690	0.88
Non-Cytoplasmic	1691	1696	0.67
Transmembrane Helix	1697	1717	0.86
Cytoplasmic	1718	1827	0.61
Transmembrane Helix	1828	1849	0.95
Non-Cytoplasmic	1850	1926	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAHPQGGRN GYDDGYGHNP QADAYYQDGY YDQNDYSQHD GYYDNRGNGD NSYQPQDGYY  60
   61 DNNHQGYEDE YYNDQYYDQG AAGYQYGPQQ GRRRGHDSEE DSETFSDFTM RSETARAADM 120
  121 DYYGRGDERY NSYNDSQMGG RGYRPPSSQI SYSVNRSSGA STPVYGYDYG NALPAGQRTR 180
  181 EPYPAWTSDS QIPLSKEEIE DIFLDLVNKF GSQRDSMRNM YDHFMTLLDS RASRMTPNQA 240
  241 LLSLHADYIG GDNANYRRWY FAAHLDLDDA VGFANMNLGK ASRKTRKARK AAKKAAGGGP 300
  301 QNEEQTLADL EGDNSLEAAE YRWKTRMNRM SQHERARQIA LYLLCWGEAN QVRFMPEALC 360
  361 FIFKCADDFY HSPECQNRVE PVQEFTYLNE IITPLYQYCR DQGYEIFDGK YVRRERDHNK 420
  421 IIGYDDINQL FWYPEGIERI VMNDKSRIVD IPPAERYQKL KDVNWKKVFF KTYKETRSWF 480
  481 HMMVNFNRVW VIHVGAFWFY TAFNSPTLYT RNYKQRENTQ PTAAARWTAS GLGGAVATFI 540
  541 MIFATICEWA YVPRAWTGAQ HLTKRLIFLI GIFIINVGPA VYVFGVNQDN KIAHILGIVS 600
  601 FFFNLLTFFM FSIMPLGGLF GSYLTKNSRK YVASQTFTAS YPRLHGNDMW MSYGLWVCVF 660
  661 GAKLAESYFF LTLSFRDPIR ILSQMRISKC AGDALFGASR DVLCKQQPKI LLGLMFFTDL 720
  721 SLFFLDTYMW YIILNAIFSV ARSFYLGVSI WTPWRNIFSR LPKRIYSKVL ATTDMEIKYK 780
  781 PKVLISQVWN AIVISMYREH LLAIDHVQKL LYHQVPSEQE GKRTLRAPTF FVSQEDHSFK 840
  841 TEFFPTQSEA ERRISFFAQS LSTPIPEPVP VDNMPTFTVL IPHYSEKILL SLREIIREDE 900
  901 PYSRVTLLEY LKQLHPHEWD CFVKDTKILA DETSQFNGEE KNEKDAAKSK IDDLPFYCIG 960
  961 FKSAAPEYTL RTRIWASLRS QTLYRTISGF MNYSRAIKLL YRVENPEVVQ MFGANSEKLE1020
 1021 RELERMARRK FRIVVSMQRY AKFNKEEREN TEFLLRAYPD LQISYLDEEP PANEGEEPRL1080
 1081 YSALIDGHSE IMENGLRRPK FRVQLSGNPI LGDGKSDNQN HAIIFYRGEY IQLIDANQDN1140
 1141 YLEECLKIRS VLAEFEEMNT DNVSPYVPGL PPSKTNPVAI LGAREYIFSE NIGMLGDVAA1200
 1201 GKEQTFGTLF ARTLAQIGGK LHYGHPDFLN GVFMTTRGGV SKAQKGLHLN EDIYAGMNAL1260
 1261 LRGGRIKHCE YYQCGKGRDL GFGSVLNFTT KIGTGMGEQM LSREYYYLGT QLPLDRFLSF1320
 1321 YYAHPGFHIN NLFIMLSVQM FMICLINLGA LKHETIPCIV KKGVPITDPI LPTGCADTIP1380
 1381 IQEWVQRCTA SICIVFLLSF LPLVVQELTE RGSWRAITRL AKHFGSLSPF FEVFVCQIYA1440
 1441 NSLHNNLSFG GARYIGTGRG FATARIPFGV LYSRFAGPSI YFGSRLLMML LFGTLTVWTG1500
 1501 WLLYFWASLL ALCISPFLFN PHQFAWNDFF IDYRDYLRWL SRGNSRSHAS SWIAFCGLSR1560
 1561 TRITGYKRKV LGSPSEKLSG DAPRAQFTNI FFSEIVGPLV LVVVTLIPYL FINAQTGVKE1620
 1621 DEAKPTNSII RLAIIAFAPI AVNAGLLAVL FAMACCMGPV LSMCCKKFGS VLAAIAHGVA1680
 1681 VVMLMAFFEV MFFLEGWVFV KALLGMIAVI ATQRFIYKLI ISLALTREFR QDTSNIAWWT1740
 1741 GKWYNMGWHS MSQPGREFLC KITELGMFSA DFILGHVLLF FMLPPLCIPY VDKGHSVMLF1800
 1801 WLRPSRQIRP PIYSMKQSKL RKRGVIRFAI LYFVMLVIFL ALIVGPIVAS RFLSPLPSIP1860
 1861 MNLLQPTGLN NNDTTSELTG LALRGVTDQR RPVSRGCEVV LVWGKTIREW GIGGLIEGWV1920
 1921 SRKTNV