YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86515354, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSNNVNSVI VVGGGLVGSL CAIFMAKRGY HVTLFEYRED IRTAKFARGR SINMALSNRG  60
   61 RKALRAVGIE KIILESAIPM KGRLLHDLKG RTTSVPYDAL TGQCIYSISR DYLNNVLLTE 120
  121 LEKYPNVKIY FNHKLMSVSF EDERISVMNL ITEEITTHQA DLIIEADGAY STLRRYMQLT 180
  181 PLFEYSQTYI QHGYLELVIP PENGPKMTPN HLHIWPRGQF MMIALPNKDN SWTVTLFMPF 240
  241 GKFESLRNAA ELKDFYYKTF PDAVPLIGED LLVNDFFKVK PSALVSVKCK PYHVGSKFLL 300
  301 IGDAAHAMVP FYGQGMNAGF EDCFLLDGIL ERRSNDIAGS IEEFSRERVE DAYAICELAM 360
  361 YNYVEMRDLV TRPSYRLRKF FDELLFKCMK EKWIPLCNSV TFSNFGYKQC VENRKWQNKV 420
  421 IQKFLWTGGL VTSALFAYGL RIWLY

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.62
Transmembrane Helix	8	26	0.73
Cytoplasmic	27	423	0.68
Transmembrane Helix	424	444	0.85
Non-Cytoplasmic	445	445	0.75