YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|218188749
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	108	0.91
Transmembrane Helix	109	127	0.93
Non-Cytoplasmic	128	138	0.70
Transmembrane Helix	139	157	0.96
Cytoplasmic	158	167	0.83
Transmembrane Helix	168	189	0.85
Non-Cytoplasmic	190	195	0.67
Transmembrane Helix	196	216	0.85
Cytoplasmic	217	224	0.71
Transmembrane Helix	225	247	0.88
Non-Cytoplasmic	248	258	0.77
Transmembrane Helix	259	281	0.89
Cytoplasmic	282	290	0.83
Transmembrane Helix	291	312	0.92
Non-Cytoplasmic	313	323	0.73
Transmembrane Helix	324	343	0.95
Cytoplasmic	344	355	0.78
Transmembrane Helix	356	374	0.82
Non-Cytoplasmic	375	380	0.76
Transmembrane Helix	381	404	0.91
Cytoplasmic	405	419	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASTTCPAR SMASVSRALR PRPHAAIASA AVRTAARLGG GLGIVCSMPS YGRKEKEEWG  60
   61 LTIASAPATT AAPALRSCQL LCKAEANISS NLPESIPSEA NQYEKIVELL TTLFPVWVIL 120
  121 GTIIGIYKPS MVTWLETDLF TVGLGFLMLS MGLTLTFEDF RRCMRNPWTV GVGFLAQYLI 180
  181 KPMLGFAIAM TLKLSAPLAT GLILVSCCPG GQASNVATYI SKGNVALSVL MTTCSTIGAI 240
  241 VMTPLLTKLL AGQLVPVDAA GLAISTFQVV LLPTIVGVLA HEYFPKFTER IISITPLIGV 300
  301 LLTTLLCASP IGQVSEVLKA QGGQLIIPVA LLHVAAFALG YWLSKVSSFG ESTSRTISIE 360
  361 CGMQSSALGF LLAQKHFTNP LVAVPSAVSV VCMALGGSAL AVFWRNRGLP ANDKDDFKE