YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29420823
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTSRALGLG SALRTAAFTP RTLRNQVVLR NSITRRFVQT ESLTPAENLQ LLNKQRLKRP  60
   61 SSPHFTIYQP QLTWLGSIAN RVTGAGLSVL LYGFSIAYLI APGTFDSAHV VEFVAGLPDG 120
  121 VKYAGKAILA APFSYHAWNG LRHLAWDAGK FLSVKGAYAT GYAVLGLTGV STVVLTFFK

Type	Start	End	Confidence
Cytoplasmic	1	81	0.90
Transmembrane Helix	82	101	0.87
Non-Cytoplasmic	102	155	0.70
Transmembrane Helix	156	178	0.86
Cytoplasmic	179	179	0.60