YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57222253, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	183	0.98
Transmembrane Helix	184	205	0.88
Non-Cytoplasmic	206	214	0.80
Transmembrane Helix	215	237	0.88
Cytoplasmic	238	253	0.84
Transmembrane Helix	254	276	0.90
Non-Cytoplasmic	277	379	0.97
Transmembrane Helix	380	400	0.92
Cytoplasmic	401	408	0.88
Transmembrane Helix	409	431	0.85
Non-Cytoplasmic	432	458	0.85
Transmembrane Helix	459	479	0.91
Cytoplasmic	480	490	0.83
Transmembrane Helix	491	514	0.87
Non-Cytoplasmic	515	549	0.91
Transmembrane Helix	550	571	0.88
Cytoplasmic	572	591	0.90
Transmembrane Helix	592	610	0.95
Non-Cytoplasmic	611	622	0.78
Transmembrane Helix	623	646	0.91
Cytoplasmic	647	664	0.97
Transmembrane Helix	665	686	0.93
Non-Cytoplasmic	687	703	0.88
Transmembrane Helix	704	727	0.87
Cytoplasmic	728	786	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFSEHGEML RQPSNSVPPQ PSGGPVGATT NTKPENSKPA PPPPPVNERK TFCPSENKPC  60
   61 DMEANKAYGT FKNTAPGPTF AGVNSAVRKD SVGKMDASTG KATSDFMSNN QSAVRIAAEH 120
  121 NNSTGDWTSM SQTTIILGTD GNTSVLPGTV TGPPTDDTGR LFQDDDDDDG GDENKARGNW 180
  181 SNKLDFILSM VGYAVGLGNV WRFPYLAFQN GGGAFLIPYL IMLGLAGIPI FLLEVSLGQF 240
  241 ASQGPVSVWK AIPALQGCGI AMLIISVLIA IYYNIIMCWT LYYLFASLKE TLPWATCKNE 300
  301 WNTVECKDKD MLLLDTCILR DRNITSIKNT TFCLSANVVG NLSKLLNVTV DNKTYVSPSE 360
  361 EYFKYNVLHI SKGIEYPGDI RWPLAACLFL AWLIVYASLA KGIKSSGKVV YFTATFPYVV 420
  421 LVILLIRGVT LPGAGSGILY FITPKWEKLN DAKVWKDAAT QIFFSLSAAW GGLITLSSYN 480
  481 KFHNNCYRDT LIVTCTNSAT SIFAGFVIFS VIGFMAHELK VPIESVADEG PGIAFVVYPE 540
  541 ALTRLPLSPF WAIIFFLMLL TLGLDTMFAT IETIVTSVSD EFPKYLRKHK PQFTLVCCLS 600
  601 FFVLGFPMIT ESGMYMLQLV DTFAASYSLV IIAIFELVGI SYIYGLQRFC EDIEMMIGFQ 660
  661 PNKFWRVCWA FVTPTILTFI LALSLYQWKV MTYEDYTYPN WSMVLGWLMV ICSVIWIPIM 720
  721 FAIKMHLAPG SLIERLKLVC SPQPDWGPFL MKHRGERYKN MIDPLGTNSL GLKLPPKDFQ 780
  781 LSAQYQ