YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VGL2B_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.96
Transmembrane Helix	72	95	0.80
Non-Cytoplasmic	96	125	0.87
Transmembrane Helix	126	146	0.77
Cytoplasmic	147	154	0.68
Transmembrane Helix	155	174	0.88
Non-Cytoplasmic	175	183	0.59
Transmembrane Helix	184	203	0.79
Cytoplasmic	204	214	0.88
Transmembrane Helix	215	238	0.88
Non-Cytoplasmic	239	245	0.77
Transmembrane Helix	246	264	0.95
Cytoplasmic	265	306	0.96
Transmembrane Helix	307	332	0.81
Non-Cytoplasmic	333	352	0.83
Transmembrane Helix	353	371	0.91
Cytoplasmic	372	387	0.82
Transmembrane Helix	388	406	0.74
Non-Cytoplasmic	407	411	0.58
Transmembrane Helix	412	434	0.87
Cytoplasmic	435	444	0.60
Transmembrane Helix	445	468	0.88
Non-Cytoplasmic	469	479	0.61
Transmembrane Helix	480	499	0.91
Cytoplasmic	500	587	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTVKERVLA PGKEKMRNLA GKTLGHMHRV MERKQKTGEV IELTEDGRPM HMPEKKAPLV  60
   61 DCTCFGLPRR YIIAIMSGLG FCISFGIRCN LGVAIVDMVN NSTIHKGGKI IIKGKAKFNW 120
  121 DPETVGMIHG SFFWGYTVTQ IPGGYISSRL AANRVFGAAI LLTSTLNMFI PSAARVHYGC 180
  181 VMFVRILQGL VEGVTYPACH GIWSKWAPPL ERSRLATTSF CGSYAGAVVA MPLAGILVQY 240
  241 SGWSSVFYIY GSFGIVWYMF WILVSYESPA DHPTITDEER TYIEESIGES AKLLGAMEKY 300
  301 KTPWRKFFTS MPVYAIIVAN FCRSWTFYLL LISQPAYFEE VFGFEISKVG MVSALPHLVM 360
  361 TIIVPIGGQL ADYLRSKNIL TTTTVRKIMN CGGFGMEATL LLVVGFSHSK GVAISFLVLA 420
  421 VGFSGFAISG FNVNHLDIAP RYASILMGIS NGVGTLSGMV CPLIVGAMTK NKTREEWQNV 480
  481 FLIASLVHYG GVIFYGIFAS GEKQPWADPE ETSDEKCGFI DEDELAEETG DITLSHAPFG 540
  541 AQGALGAPAK TYGATTQLNG GWAKGWEKTE EFIQEDAERT YTGDGYS