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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|18252636
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFQWFLSAS ASLSLFLLLD FVVWIHGERD FNVNDSQVPV IEPKDVPAYK QDPYVTELMS  60
   61 CQNTPSEIVL SLLLKKHDWS ELTATKRAHV QAKLAKFFAI PKEFISLDSV SKRELRSMHK 120
  121 LAMRKGGKGN KNIETLNRRL GRANFMIGCG PSYFVMGEPI AKQIAHQMKD GTIGALTEEN 180
  181 FGLWFIWRKE LKSRSNRKRR QSEGSGADED DYDYGDDDEE VAEPSTEVPP VTTHAHRHHH 240
  241 GAEGGEPDAI SSGNNSLANN ELSTPATPTS SVATTTASTP ESSSISSNFV STDYMEPQPE 300
  301 ENSPPIIKTR LQKLAVTSGK AFTFHVLPET FYDAEDQGNL RLALTDKDGH ELKANSWLQF 360
  361 NADKRELYGL PLDDTVSRWQ YRLSATDSGN ASVTETVEIS VQQHRAVRTI NHEISVFVRI 420
  421 NEKPGHNIDW QLKLINAVAR TLDDSTNSAV VVREIRQTPH DPHSATFVYF NETLPTSECP 480
  481 EKELKDIIAR LDANRLSDLV QPQLGIKSIT GQLIGSCQKD LTQVKPTQHM TKNVPPMPRN 540
  541 QVDRVNASLG QLLVYKVPAD TFYDANDNQL TLTLKTRDHL ELSPRHWLQF DSKNEEFYGI 600
  601 PKSGDIGSEE YLLVAEDSGG LSAHDALVVV VSPAPKRDFG FFFKAYLSIK HERFNADLQR 660
  661 KFVERVAKLN GDPTTGQIQI RSITTHHDSD GTIVNFYNTT LYRKHNSCRE KEVAMTRSVY 720
  721 LNSDLSLREA AKRALGPELN LTNFSVVPFS ICHHTENIDT NQLDYIPSRP EEPTHKSSFG 780
  781 EDYMITFVWP IVIIVAMLVA ASIIACCLHW CRQRSGKMEL GDEEERKSFR AKGIPVIFQD 840
  841 EYEEKPEIGN KSPVILKDEK PPLLPPSYNT SNMNGDNDVD DYVPPPSVVV GGREVRGKSP 900
  901 ATPSYRKPPP YVSP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle