YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	hoe2-PC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	201	0.98
Transmembrane Helix	202	224	0.89
Non-Cytoplasmic	225	230	0.82
Transmembrane Helix	231	249	0.95
Cytoplasmic	250	264	0.85
Transmembrane Helix	265	285	0.89
Non-Cytoplasmic	286	302	0.80
Transmembrane Helix	303	327	0.85
Cytoplasmic	328	342	0.79
Transmembrane Helix	343	363	0.84
Non-Cytoplasmic	364	385	0.85
Transmembrane Helix	386	408	0.89
Cytoplasmic	409	494	0.99
Transmembrane Helix	495	515	0.94
Non-Cytoplasmic	516	521	0.80
Transmembrane Helix	522	540	0.94
Cytoplasmic	541	552	0.84
Transmembrane Helix	553	575	0.66
Non-Cytoplasmic	576	594	0.59
Transmembrane Helix	595	623	0.76
Cytoplasmic	624	628	0.40
Transmembrane Helix	629	654	0.55
Non-Cytoplasmic	655	655	0.27
Transmembrane Helix	656	671	0.66
Cytoplasmic	672	685	0.60
Transmembrane Helix	686	709	0.87
Non-Cytoplasmic	710	712	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLRDTIRNL RPASPGREKS SGIELQQRSP RGACHHNQVA AVQVTEQSLQ VWRALPAEIR  60
   61 HDPSMASFQM ENERIHVFKL LQKPTGDFRL KIHGAFRELS TLDAPENETL SFGFLTVQPQ 120
  121 VSTYIGENHS QVFQDILPAW RLPLLSEEEL MLRAPAVTTN RTYQMTQELD EMLAGKNSEF 180
  181 RLHIYSDVEV DLAIVLNYNP LIVNARTGSI LAGVILLIFY ALLVWELFER TFVAMICSIL 240
  241 SVTTLACFND RPNMDEIIQW MDMELLTLLF CMMLLILILT ETGVFDYLAV FCFEISGGKI 300
  301 WPMIYSLCLV TCLVSSVLDN MTTVLLLTPV AIRLCEVMQL DPLPVVMGII VHANIGGALT 360
  361 PIGDPISIIV STNHFIVDND VTFPTFVAHT FPGVILAVIQ SCVYLRLFYH NIDALRLNEP 420
  421 KEMSELRREM KVWQRALNAV ASCSKDAQLV RGTLQAKIKQ LKRTLRRLQK GVGSTEVYTN 480
  481 TLDELKQKYP IKNKTLLLQS AGALLFVIVC FFIQSVPHWR TLPLGWVALL GVILLLIILN 540
  541 RDDMEHLMHR IEWTTLLFFA AMFVMMECVE RLGIFACISE LTEHVILSVG KSHRLAMAIF 600
  601 MILWMSALAS SILDSIPVAA IMVKLVTSLV AKPSLGLPLQ PLVWALTLGA SMGGNGTLYG 660
  661 ASANVIAAGI AEQHGYKLSF TRYLRTVFPM MLGQITLMTV YLLVAHVVFE WH