YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25989115
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGGWWRGGG GRLGGKAIME GHSTPNGAAA SRRNNSTRTN IATNGCAHSG ILLFVLTAMT  60
   61 LTSLITPTEQ LAVAPNGTTL HQLESVGSES YPSINGTQNE TMVTSVRPHL DHRNRPTQQN 120
  121 GSHYLEYDDD GPDCSYSYNF ILKLITMILY ALVCIIGLFG NTLVIYVVMR FSKMQTVTNI 180
  181 YILNLAIADE CFLIGIPFLL YTMQVGNWPF GNYMCKAYMV STSITSFTSS IFLLIMSADR 240
  241 YIAVCHPISS PRYRTPFVSK LVSAFAWMTS VLLMLPVILF ASTVQSSNGN VSCNIEWPDT 300
  301 QNSHTDSTFI LYSLVLGFAT PLTFILVFYC LVIRKLHTVG PKHKSKEKKR SHRKVTKLVL 360
  361 TVISAYIFCW LPHWISQVAL ISSAPQRCAS RLEVAVFLAC GCLSYSNSAM NPILYAFLSD 420
  421 NFKKSFMKAC TCAARKDVNA QLQLENSFFP KFGKGRQSER LLGGNGKGGA QRGALTKKKC 480
  481 LATRNNNAPM ATTTTTTTTT TGTDAVTCLQ PPVHQVPAEI QVGNPATVLV VNAETNNCKP 540
  541 PVLHTDL

Type	Start	End	Confidence
Cytoplasmic	1	40	0.96
Transmembrane Helix	41	65	0.82
Non-Cytoplasmic	66	145	0.97
Transmembrane Helix	146	168	0.93
Cytoplasmic	169	179	0.86
Transmembrane Helix	180	201	0.94
Non-Cytoplasmic	202	216	0.89
Transmembrane Helix	217	238	0.87
Cytoplasmic	239	256	0.87
Transmembrane Helix	257	281	0.86
Non-Cytoplasmic	282	309	0.94
Transmembrane Helix	310	333	0.92
Cytoplasmic	334	353	0.96
Transmembrane Helix	354	375	0.93
Non-Cytoplasmic	376	547	0.58