YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DCSTP_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLWTLGTSI FLRLWGTYVF PRSPSWLDFI QHLGVCCFVA FLSVSLFSAA FYWILPPVAL  60
   61 LSSVWMITCV FLCCSKRARC FILLAVLSCG LREGRNALIA AGTGVVIFGH VENIFYNFRG 120
  121 LLDSMTCNLR AKSFSVHFPL LKRYTEAIQW IYGLATPLNL FDDLVSWNQT LVVSLFSPSH 180
  181 ALEAHMNDTR GEVLGVLHHM VVTTELLTSV GQKLLALAGL LLILVSTGLF LKRFLGPCGW 240
  241 KYENVYITKQ FVRFDEKERH QQRPCVLPLN KKERKKYVIV PSLQLTPKEK KTLGLFFLPV 300
  301 LTYLYMWVLF AAVDYLLYRL ISSMNKQFQS LPGLEVHLKL RGEKQGTQGV VHDSAFNISM 360
  361 FEPSCIPKPR LSVSETWVPL SIILLTLIIL GLLSSMLMQL KILVSVSFYP KVERERIEYL 420
  421 HAKLLEKRSK QPLREADGKP SLYFKKIHFW FPVLKMIRKK QTIPANEDDL

Type	Start	End	Confidence
Cytoplasmic	1	28	0.88
Transmembrane Helix	29	51	0.85
Non-Cytoplasmic	52	53	0.56
Transmembrane Helix	54	75	0.85
Cytoplasmic	76	95	0.84
Transmembrane Helix	96	116	0.76
Non-Cytoplasmic	117	213	0.82
Transmembrane Helix	214	231	0.94
Cytoplasmic	232	292	0.86
Transmembrane Helix	293	315	0.86
Non-Cytoplasmic	316	376	0.85
Transmembrane Helix	377	400	0.84
Cytoplasmic	401	470	0.85