YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53793343, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGFSLRGGG GGGGGGGGVG GGGGGGRGGE RGGGGDHAIG ADSLFLYARG AAAAAADTAG  60
   61 SGGGGGGIGF QLWHPQQQAA AAAAAVPHTS QFFSSGVATG VVLGFSSHDG GGGGGHMGGP 120
  121 GGGAGGGRAG TSCQDCGNNA KKDCSHLRCR TCCRSRGFSC ATHVKSTWVP AAKRRERQQQ 180
  181 LAALFRGAAA NNSAAAAAAA AASKRPRELV RTLGRLPSAN TAMVATTTSS GTPPILTPTL 240
  241 SIMVTLTLTP PWLCAGEGDG RFPPELSVEA VFRCVRIGAV DEADAELAYQ TAVSIGGHTF 300
  301 KGILRDHGPA DEAAGQLPPS SAEYHQLTGQ GREESSPAGS SEGVGGGHGA ATAATSAAVL 360
  361 MDPYPTPIGA FAAGTQFFPH NPRT

Type	Start	End	Confidence
Cytoplasmic	1	7	0.48
Transmembrane Helix	8	26	0.45
Non-Cytoplasmic	27	90	0.47
Transmembrane Helix	91	105	0.36
Cytoplasmic	106	181	0.53
Transmembrane Helix	182	202	0.43
Non-Cytoplasmic	203	384	0.74