YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53791995, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	34	0.99
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	278	0.99
Transmembrane Helix	279	300	0.92
Cytoplasmic	301	343	0.94
Transmembrane Helix	344	367	0.90
Non-Cytoplasmic	368	376	0.78
Transmembrane Helix	377	396	0.94
Cytoplasmic	397	415	0.85
Transmembrane Helix	416	436	0.93
Non-Cytoplasmic	437	449	0.81
Transmembrane Helix	450	472	0.88
Cytoplasmic	473	494	0.95
Transmembrane Helix	495	521	0.82
Non-Cytoplasmic	522	532	0.78
Transmembrane Helix	533	558	0.89
Cytoplasmic	559	567	0.87
Transmembrane Helix	568	589	0.93
Non-Cytoplasmic	590	609	0.84
Transmembrane Helix	610	631	0.94
Cytoplasmic	632	642	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIAGGTGCR RGLLLPPLLF AAALLLSAAS PARAFYLPGV APRDFQKDDE LQVKVNKLSS  60
   61 TKTQLPYDYY FLDYCKPEAI KNSAENLGEV LRGDRIENSV YNFKMRRDET CKVVCRSKLS 120
  121 PEAAKNFKEK IDDEYRVNMI LDNLPVVVPR QTREGSQTPS FEHGYRVGYK LKDDKYYINN 180
  181 HLSFKVLYHE DPNSPDARIV GFHVIPSSIK HEYSAWDDKN PTVQTCNANN KITPGSHTPQ 240
  241 DVVPEAYVVF SYDVTFEASE IIWASRWDVY LLSSDSQIHW FSIINSLMIV LFLSGMVAMI 300
  301 MMRTLYKDIA NYNQLDNQDE AQEETGWKLV HGDVFRPPVH SGLLCVYVGT GVQFFGMTLV 360
  361 TMMFALLGFL SPANRGGLMT AMVLLWVFMG VLAGYTSSRL YKMFKGTEWK KITLKTAFMF 420
  421 PGIIFALFFF LNALIWGEKS SGAVPFGTMF ALFLLWFGIS VPLVFVGSFL GFKQPAIEDP 480
  481 VKTNKIPRQI PEQAWYLQPA FSILAGGILP FGAVFIELFF ILTSIWLNQF YYIFGFLFIV 540
  541 FIILIVTCAE ITIVLCYFQL CSEDYHWWWR AYLTAGSSAL YLFAYAIFYF FNKLEITKLV 600
  601 SGILYFGYML IISYAFFVLT GTIGFYACFW FVRKIYASVK ID