YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|53791808, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDSGGSVVS VDVERISFGG KEHHIQTNHG SVSVAVYGDH DKPALVTYPD IALNHMSCFQ  60
   61 GLLFCPEASS LLLHNFCIYH ISPPGHELGA APVSPSSPVA SVDELADQVS DVLDFFGLGP 120
  121 VMCLGVTAGA YILTLFATKY RERVLGLILV SPLCRTPSWT EWFHNKVMSN LLYYYGMCNM 180
  181 VKDCLLQRYF SKGVQGCSAV PESDIVQASR SFLDQRQSMN VWRFIHTINE RHDLTESLKE 240
  241 LQCRTLIFVG QNSQFHAEAV HMTSKLDERY SALVEVQGCG SVVTEEQPHA MLMPLEYFLM 300
  301 GYGLYRPSQI SCSPRSPLNP FCISPELLSP ESMGVKLKPI KTRANLEV

Type	Start	End	Confidence
Cytoplasmic	1	60	0.55
Transmembrane Helix	61	78	0.41
Non-Cytoplasmic	79	115	0.83
Transmembrane Helix	116	137	0.67
Cytoplasmic	138	348	0.57