YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28881938, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.81
Transmembrane Helix	6	27	0.88
Cytoplasmic	28	44	0.80
Transmembrane Helix	45	64	0.80
Non-Cytoplasmic	65	91	0.85
Transmembrane Helix	92	112	0.90
Cytoplasmic	113	121	0.87
Transmembrane Helix	122	139	0.96
Non-Cytoplasmic	140	145	0.77
Transmembrane Helix	146	165	0.95
Cytoplasmic	166	176	0.90
Transmembrane Helix	177	196	0.92
Non-Cytoplasmic	197	214	0.90
Transmembrane Helix	215	236	0.82
Cytoplasmic	237	249	0.74
Transmembrane Helix	250	269	0.93
Non-Cytoplasmic	270	277	0.70
Transmembrane Helix	278	299	0.93
Cytoplasmic	300	306	0.84
Transmembrane Helix	307	326	0.88
Non-Cytoplasmic	327	334	0.60
Transmembrane Helix	335	356	0.84
Cytoplasmic	357	373	0.81
Transmembrane Helix	374	395	0.89
Non-Cytoplasmic	396	411	0.85
Transmembrane Helix	412	435	0.89
Cytoplasmic	436	462	0.88
Transmembrane Helix	463	481	0.89
Non-Cytoplasmic	482	490	0.65
Transmembrane Helix	491	513	0.87
Cytoplasmic	514	594	0.75
Transmembrane Helix	595	617	0.77
Non-Cytoplasmic	618	647	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPTTLVLSS SLLTIFVLLI YPLLNTLSPS PRPLDWAETH VKNAVKISFF VSLVPLFLFL  60
   61 DEGAETIVTN WRWMNILAFD VNLSFKFDHY SLIFTPIALY VTWSILEFAS WYMHSDPCMN 120
  121 RFFKYLLLFL VAMIVLVTAN NMFQLFIGWE GVGIMSFLLI GWWYGRADAN TAALQAVLYN 180
  181 RVGDIGLILS MAWLATNYNS WELQQIFSTT RGDDLTLPLL GLIVAATGKS AQFGLHPWLP 240
  241 SAMEGPTPVS ALLHSSTMVV AGIFLLIRLS PLMAGNPVAL TTCLCLGALT TLFTATCALT 300
  301 QNDIKKIVAF STSSQLGLMM VTIGLGQPQL AFLHICTHAF FKAMLFLCSG SVIHSLNDEQ 360
  361 DIRKMGGMHR LTPFTSTALT IGSLALTGTP FLAGFFSKDA IIEALNTSYL NAWALVLTLL 420
  421 ATSFTAVYSL RVVFFVSMGH PRFPSLSPIN ENNPSVINPI KRLAWGSIVA GLILTSSFLP 480
  481 SKTPIMTMAP LLKISALLVS IFGLIIALEL ASLTGKQFKP TPSLSSHNFS NMLGYFPTLV 540
  541 HRLAPKLNLI LGQSIASQGV DQTWFEKVGP KAIVSANLPL VSGVTGVQRG MVKTYLTLFF 600
  601 LSTTLAVFLA SVKRLVGFLG LSLVLTPELR TVWVATPTRK PQASPHQ