YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25360882
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEQLDPFSA SNLPDFISSQ KIGRPVNFEG QTNRGHPFSG LKKRGQSSRS WVKIDQDGNS  60
   61 AVLELDKATI MKRCSLPSRD LRLLDPLFIY PSSILGRERA IVVSLEKIRC IITAEEVILM 120
  121 NARDASVVQY QSELCKRLQS NHNLNVKDDL PFEFKALELV LELSCLSLDA QVNELEMEVY 180
  181 PVLDDLATNI STLNLEHVRR LKGRLLTLTQ KVQKVCDEIE HLMDDDDDMA EMYLTEKKER 240
  241 AEAHASEELE DNIGEDFESS GIVSKSAPVS PVGSTSGNFG KLQRAFSSIV GSHKSLLSSS 300
  301 SIGENIDQLE MLLEAYFVVV DNTLSKLSSL KEYIDDTEDL INIKLGNVQN QLIQFQLLLT 360
  361 AATFVAAIFA AVTAVFGMNL QDSVFQNPTT FQYVLLITGI GCGFLYFGFV LYFKHKKVFP 420
  421 L

Type	Start	End	Confidence
Cytoplasmic	1	354	0.66
Transmembrane Helix	355	378	0.87
Non-Cytoplasmic	379	390	0.61
Transmembrane Helix	391	413	0.91
Cytoplasmic	414	421	0.64