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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25281971
Protein type: Transmembrane
Type Confidence: 0.86
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRLLEPCWW ILFLKITSSV LHYVVCFPAL TEGYVGTLQE SRQGSSVQIR RRKASGDPYW  60
   61 AYSGAYGPEH WVTSSVSCGG SHQSPIDILD HHARVGEEYQ ELQLDGFDNE SSNKTWMKNT 120
  121 GKTVAILLKD DYFVSGAGLP GRFKAEKVEF HWGHSNGSAG SEHSVNGRRF PVEMQIFFYN 180
  181 PDDFDSFQTA ISENRIIGAM AIFFQVSPRD NSALDPIIHG LKGVVHHEKE TFLDPFVLRD 240
  241 LLPASLGSYY RYTGSLTTPP CSEIVEWIVF RRPVPISYHQ LEAFYSIFTT EQQDHVKSVE 300
  301 YLRNNFRPQQ ALNDRVVSKS AVRDAWNHDL ADFLDNPLGT EASKVCSSPP IHMKVQPLNQ 360
  361 TALQVSWSQP ETIYHPPIMN YMISYSWTKN EDEKEKTFTK DSDKDLKATI SHISPDSLYL 420
  421 FRVQAVCRND MRSDFSQTML FQANTTRIFQ GTRIVKTGVP TASPASSADM APISSGSSTW 480
  481 TSSGIPFSFV SMATGMGPSS SGSQATVASV VTSTLLAGLG FGGGGISSFP STVWPTRLPT 540
  541 ASAASKQAGR PVLATTEALA SPGPDGDSAP TKDGEGAEEG EKEEKSESED GEREQEEEEK 600
  601 DSEKKEKSEA THTAAESDQT APAPTPSSPH RTAQEGGHQT IPGHRQDHSA PVTDQPGHVD 660
  661 PGLDTLVDTA TQVPPTATEE HYSGSDPKRP EMPSKKPISR GDRFSEDSKF ITVNPAEKNT 720
  721 SGMISRPSPG RMEWIIPLIV VSALTFVCLV LLIAVLVYWR GCNKIKSKGF PRRSREVPSS 780
  781 GERGEKGSRK CFQTAHFYVE DSSSPRVVPN ESIPIIPIPD DMEAIPVKQF GKSQHGFSGD 840
  841 FEEVQRCTAD MNITAEHSNH PDNKHKNRYI NILAYDHSRV KLRPLPGKDS KHSDYINANY 900
  901 VDGYNKAKAY IATQGPLKST FEDFWRMIWE QNTGIIIMIT NLVEKGRRKC DQYWPTENTE 960
  961 EYGNIIVTLK STEVHACYTV RRFSVRNTKV KKGQKGNPKG RQNERTVIQY HYTQWPDMGV1020
 1021 PEYALPVLTF VRRSSAARMP DMGPVLVHCS AGVGRTGTYI VIDSMLQQIK DKSTVNVLGF1080
 1081 LKHIRTQRNY LVQTEEQYIF IHDALLEAIL GKETEVSSSQ LHSYVNSILI PGVGGKTRLE1140
 1141 KQFKLITQCN AKYVECFSAL RGQQVEGS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle