YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30141019
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLIPMATLS FFALISIISA MDMSIINYDA THMSSSSSSA PLRTDDEVNA LYESWLVKHG  60
   61 KTYNALGEKD RRFQIFKDNL RFIDEHNSGD HTYKLGLNKF ADLTNEEYRM TYTGIKTIDD 120
  121 KKKLSKMKSD RYAYRSGDSL PEYVDWREQG AVTDVKDQGS CGSCWAFSTT GSVEGVNKIV 180
  181 TGDLISVSEQ ELVNCDTSYN QGCNGGLMDY AFEFIIKNGG IDTEEDYPYT GKDGKCDKNK 240
  241 KNAKVVTIDS YEDVPVNDES SLKKAVSNQP VAVAIEAGGR DFQFYTSGIF TGSCGTALDH 300
  301 GVLAAGYGTE DGKDYWLVKN SWGAEWGEGG YLKMERNIAD KSGKCGIAME ASYPIKNGDN 360
  361 PPNPGPTPPS PAAPEVVCDE YSTCPESTTC CCIYEYYGYC FAWGCCPLEG ASCCDDHYSC 420
  421 CPHDYPICNV RRGTCSKSRN SPLEISATKR ILATPTKLKR N

Type	Start	End	Confidence
Signal Peptide	1	20	0.89
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	461	0.99