YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52077261, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSCGLEWV VCLGCTRWAW KRLTYIGAYD SEAWPAAAPG EFEPVPRICR VILAIYEDDL  60
   61 SNPTKFAPPG RGYAGVDLAG VVKRATYEHV GNTCPPYIVY VDHRHKEVVL AIRGLNLTRN 120
  121 ADYKVVLMDN KLGMQMFDGG YVHHGLLKAA QFILERETKT LQELLQQNGP DYKLIFAGHS 180
  181 LGSGIAALMT VLVVNNRKMF GNIPRSQIRC YALAPARCMS LNLAVKYADV INSVVLQDDF 240
  241 LPRTPTPLEY IFGSIFCLPC LLFIMCLRDT FKQDKRKFKD PRRLYAPGRM YHIVERKFCR 300
  301 CGRFPPEVRT AIPVEGRFEH IVLSCSTTSD HAIVWIERES EKALELMKGN EKPTTPPAQQ 360
  361 KMERLQSFEE EHKNALERAK TLDVPHAVDL SEVEIQEGSS PTPPSDTHSE ATSEAKSAGR 420
  421 TSWDELMHKL FTRDEGGKLV VKEDIKARNI VIE

Type	Start	End	Confidence
Non-Cytoplasmic	1	174	0.65
Transmembrane Helix	175	195	0.72
Cytoplasmic	196	209	0.42
Transmembrane Helix	210	225	0.38
Non-Cytoplasmic	226	249	0.81
Transmembrane Helix	250	267	0.91
Cytoplasmic	268	453	0.89