YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHT44_ORYSJ
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	181	0.89
Transmembrane Helix	182	200	0.89
Non-Cytoplasmic	201	214	0.71
Transmembrane Helix	215	238	0.80
Cytoplasmic	239	248	0.66
Transmembrane Helix	249	269	0.89
Non-Cytoplasmic	270	275	0.69
Transmembrane Helix	276	298	0.82
Cytoplasmic	299	310	0.87
Transmembrane Helix	311	332	0.91
Non-Cytoplasmic	333	337	0.72
Transmembrane Helix	338	356	0.91
Cytoplasmic	357	401	0.93
Transmembrane Helix	402	423	0.88
Non-Cytoplasmic	424	441	0.76
Transmembrane Helix	442	464	0.83
Cytoplasmic	465	475	0.74
Transmembrane Helix	476	493	0.71
Non-Cytoplasmic	494	529	0.46
Transmembrane Helix	530	557	0.80
Cytoplasmic	558	563	0.44
Transmembrane Helix	564	584	0.89
Non-Cytoplasmic	585	591	0.44

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMGAVLSSR TFASPLSSSG KQHPPQNNKC TCSSPPTRDK FSRLTTRTTI FQVSNYSRST  60
   61 SMERFQLSAR FHQPVVDSST NYLTRWFYNA NLKRRRIECF LTSDPINTGW LKPRRWDNFT 120
  121 SLDTACVQPD YKIPVRTRAD CKAEQYEITG SPLSPSDVPA EAVLIGDTNE ISPWWQQFPK 180
  181 RWTVVLLCFF SFLLCNMDRV NMSIAILPMS SEFGWSPATV GLIQSSFFWG YLLTQILGGI 240
  241 WADRFGGKVV LGFGVVWWSI ATVLTPLAAK IGLPFLLVMR AFMGIGEGVA MPAMNNILSK 300
  301 WVPVSERSRS LALVYSGMYL GSVTGLAFSP LLISRFGWPS VFYAFGSLGS VWFALWQRKA 360
  361 HSSPSEDPEL SKAEKRYILG GSTLKEPVTS IPWKLILSKP PVWALIVSHF CHNWGTFILL 420
  421 TWMPTYYNQV LKFNLTESGL LCVLPWLTMA IFANIGGWIA DTLVGRGVSI TNVRKIMQSI 480
  481 GFLGPALFLT LLSKVRTPAM AVLCMACSQG SDAFSQSGLY SNHQDIGPRY AGVLLGLSNT 540
  541 AGVLAGVFGT AATGYILQKG SWDSVFQVAV VLYIVGTVVW NVFSTGEKVL E