YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125606481, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQSHHPSPA RLGLTASSPS LPPNPAAGNP TSSPPQGNPS AAAAVGAAAA AAPTLTTSPS  60
   61 LLPLLPPLPR AQALLQLISA LASNLFELSP SRAAWISAYR GSLPTFLPSP SSAPPPPLPA 120
  121 PISSTKEALS LLNTLQTQLF EAVAELQETL DLQDARARLA REARAKDASI LAFAKKLREA 180
  181 HHVLDRLVDD YADYRRDPKR PRGAAAADDP EPVSDGDFGA SLHSKLNLDD VLTYAHRISY 240
  241 TTFAPPEHGA GLPLRGALPP APQENEMRMS QLYQFADLDV GVPKSQEAKE RTAAEGDATP 300
  301 LFQPSPTQEA AVLPITVPHP HGWRNGALPL EIPLPPPGWK PGDPITLPPD GILAGVKGEE 360
  361 PRASVQQMPV VVPAMVPKAQ EPIQVRHVDL DINNSSSSDE YSSDVGSSEE DDED

Type	Start	End	Confidence
Signal Peptide	1	28	0.74
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	414	0.97