YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125556387
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNHAAGGST SNGGSGVDGD GGGGGGAARR NTKMPKYSKF TQQELPACKP ILTPKWVVSV  60
   61 FFLVGVIFVP VGVVSLLAAQ NVVEIVDRYD DACVPANMTD NKLAYIQNPN ISKECTRTLT 120
  121 ITEDMNQPIF VYYQLDNFYQ NHRRYVKSRN DGQLRDAAKA NQTSACEPEK TTADGKPIVP 180
  181 CGLIAWSLFN DTYSFTRGNE NLTVDKKDIS WKSDREHKFG KNVYPSNFQN GLLKGGGTLD 240
  241 PAIPLSEQED LIVWMRTAAL PTFRKLYGRI YVDLKKNDTI TVKLSNNYNT YNFGGKKKLV 300
  301 LSTATWLGGK NDFLGFAYVI VGGVCFFLAF AFTLLYLIKP RKLGDHNYLS WNRHPGGR

Type	Start	End	Confidence
Cytoplasmic	1	55	0.88
Transmembrane Helix	56	79	0.83
Non-Cytoplasmic	80	314	0.94
Transmembrane Helix	315	338	0.92
Cytoplasmic	339	358	0.94