YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125555906
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDLFSSSSF KKYADASPAS GVGGSDMEAG GEGVVNLDRF FEDVEGVKED MKGLEALYKR  60
   61 LQSTNEETKT AHDARAVKAL RSRMDGDVEQ VLRRAKAVKG KLEALDRDNA TSRKVPGCGP 120
  121 GSSTDRTRTS VVAGLGKKLK DIMDDFQGLR TRMAAEYKET VARRYYTVTG EKAEDSTIDS 180
  181 LIESGESESF LQKAIQEQGR GQVMDTISEI QERHDAVKDI ERSLLDLHQV FLDMAALVEA 240
  241 QGHQLNDIES HVAHASSFVR RGTVELEVAR EHQKSSRKWA CVAVLAGIIL IAVLILPVLI 300
  301 NLRILTLR

Type	Start	End	Confidence
Cytoplasmic	1	278	0.55
Transmembrane Helix	279	300	0.94
Non-Cytoplasmic	301	308	0.46