YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	E138_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.70
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLLALVVG FVIVIGHLGI LVNGLGVNWG TMATHKLPPK TVVQMLKDNN INKVKLFDAD  60
   61 ETTMGALAGS GLEVMVAIPN DQLKVMTSYD RAKDWVRKNV TRYNFDGGVN ITFVAVGNEP 120
  121 FLKSYNGSFI NLTFPALANI QNALNEAGLG NSVKATVPLN ADVYDSPASN PVPSAGRFRP 180
  181 DIIGQMTQIV DFLGKNNAPI TINIYPFLSL YGNDDFPLNY AFFDGAEPIN DNGIDYTNVF 240
  241 DANFDTLVSS LKAVGHGDMP IIVGEVGWPT EGDKHANAGS AYRFYNGLLP RLGTNKGTPL 300
  301 RPTYIEVYLF GLLDEDAKSI APGPFERHWG IFKFDGQPKF PIDLSGQGQS KFLIGAQNVP 360
  361 YLPNKWCTFN PEAKDLTKLA ANIDYACTFS DCTALGYGSS CNTLDANGNA SYAFNMFFQV 420
  421 KNQDESACYF QGLATITTQN ISQGQCNFPI QIVASSASSF SCSSYSLVVL IVWFLLSGMM 480
  481 F

Type	Start	End	Confidence
Signal Peptide	1	24	0.65
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	451	0.90
Transmembrane Helix	452	476	0.84
Cytoplasmic	477	481	0.74