YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42568906, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQSQSLSTL TICGSVKVSS LLRNRLNSVK ASSLIGDRCV SCQFLRKSPS FRSHWKSLKQ  60
   61 RNLLRVEARW PFQGGGEQGL DPSSERSESA NEDILIFFFQ LDLATRVQYA MNLEQYDIAQ 120
  121 QLREKLTEVE EESIRLQEGK RGSSAKSEAQ DKGISIIRLR ADLQNAIDSE DYGLAAKLRD 180
  181 EISKLEAESL AVSAKALAFE KAEYAFRLGQ KLRHKTFGYR AVVCGMDPIC SESSSWMEAA 240
  241 EVEKLPRGSN QPFYQVLVDV RTHPDLLVAY VAEDNLLAPE KPDKERFDHP YISFLYYGAD 300
  301 TAGDFIPVKQ LREKYNRPRH EVPFDSQDED

Type	Start	End	Confidence
Signal Peptide	1	20	0.51
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	330	0.99