YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6686563
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVMEMRRS HGRERAKRRV DWVAYGYLSP ALVTICVLSI LPIFYTIYIS FTNFNQMHFL  60
   61 SYQFVGLKNY EELLNPHDPL SNLFLPTFIW TLVYALCTTA LAYLVGLFLA VLLNNKHMRE 120
  121 RTLYRTLLIV PWAVPNLISM LAWQGLLNDQ YGQINALLHG VFGLPRIPWL TSALWARIAV 180
  181 IMVNVWAGFP YMMTVCLGAL QSIPTDQYEA AEIDGANWWQ VFRYVTMPSV WRISLPLLIP 240
  241 SFSYNFNNFN ASYLLTGGGP PNSNNPFLGQ TDILATAAYK MTLTFNRYDL GATISVLLFI 300
  301 LVALISWVQM RYTGAFKEVD A

Type	Start	End	Confidence
Cytoplasmic	1	20	0.99
Transmembrane Helix	21	45	0.94
Non-Cytoplasmic	46	89	0.92
Transmembrane Helix	90	113	0.92
Cytoplasmic	114	122	0.93
Transmembrane Helix	123	146	0.87
Non-Cytoplasmic	147	166	0.78
Transmembrane Helix	167	195	0.70
Cytoplasmic	196	227	0.70
Transmembrane Helix	228	246	0.54
Non-Cytoplasmic	247	289	0.56
Transmembrane Helix	290	308	0.95
Cytoplasmic	309	321	0.55