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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|14251140, gi|...
Protein type: Transmembrane
Type Confidence: 0.59
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADIMVDSVT TGIDLNETKA VEAINRLKSA VKDSTREWQI NEAQAKSAGD AVSASKYRYE  60
   61 GLSEAMEKQK AYIANLSEGM KTINRDTDAG EKAYQKYNAQ LSTAERSLAS MTGQLNRAKS 120
  121 AYEYQQTGIE DLNKSLSAND KLMQSQIDLY EKTRNKMGAA KAEVSGLSTS YAKQTEIYRA 180
  181 QVTELKRLEA AEGTSSETLV KQKTRVNEAA SSLLNYRNKL LEANLAVTKM QPFNSESLIG 240
  241 KGLNTVYQTT EKATTAMAAG YQKVKNAAYQ SAFGIAAIGA AAIKGSQMAA DLQDSYIRTT 300
  301 NLAVTGGEKV AEVTKNVAQM QKDGAQYSVE YGKSQAEIAE GYQELIKRGY TSTEALGAMR 360
  361 SELQASVASG DDFNNVLSVT SQVVDAYGMR TDNAAQMTKN TKDVVNQLAY AADMTATDFA 420
  421 SMGKAMEYVG DSSHSAGFQL SEASSAIGIL SNHGLEADKA GTGLRKVINS ITGALSDQSA 480
  481 SQEDAAKSES ALNEKIAEHQ KKLEEAQAVV NSGTGNTKAA TKAIEKQKEA IGKLQDKVDQ 540
  541 LQSGGAAKDM LSKLGIKNSD LVDANGNLRD LTTIMSIVND HTKNMGTAEK NSVFQQLFGT 600
  601 TGQQAGIILA QNNKELEELN NKVKNSADGQ GYVANLAKKN MGSVKSEIKQ FKAAGEAVLI 660
  661 MIGQKFLPVL SDAATSMAKA FNSKEGKQGL EEIAGWIAKI FQGIVDTVKF IGTHKDEVIT 720
  721 FGKIFAGIWA TKKIGDVIVW LKKLKKSLLE IQAIDALSGG LGTGGIQGIQ GVAAEAGTVA 780
  781 STVTTRGVAA EGEALVASGG LSKATSLIPR LLGIIGSVGG STVLSGGINA GAELLSKDNT 840
  841 AQKTGGVAGS LGGAAAGAAI GSLIAPGIGT AIGAAIGGMG GKNLGKKLGD LINDGLKESS 900
  901 LKSEKLPVVK FDPKAPTKDM KEFSKDYQGF LDKINKASNV DIVDEKSLEK AKKATADAYA 960
  961 KMSKDIDKFY QNQEKDSKKQ VDLLVKNGVL SQAQADKLNK GQKDSDDKQK AAQKKNLDEM1020
 1021 KKNTDKYYSE VAKSQKSYDT QSQKDASNHA NLMKKIKSGN TSELLKIEKT YGKNSPEYQQ1080
 1081 EMNKEIAKEN SDFNKAQQAA KKKHNEAMDK LEKDYAKTQT KAEEQMNSQI NTATKIAQNK1140
 1141 QMDLLEDLKN KKGKLNQKQL IDTIEKADDE YKAVKDKAQK QKDEAVKAAN EKYKKTVAAA1200
 1201 DKERAENGSM SKAQYDEIVK NAQKQRDGAI SAAKKQQEDV TDKAKKTHKD TIDLANDKAD1260
 1261 KTVKAAAKEQ NETVSQYTKG FRDSRDLINS FVDGINGVLN FLHKGWGNIG HVSLKGFATG1320
 1321 TRGLTQDETA LVGEEGFELA HHPNHGIFAV GQQGPEIRNL KAGTSILPHS MSKEFLSLTA1380
 1381 NLPAHADGVS GFLSDALGSV KSTYKDVTSV ISKGPKGVVE AIYNGLGLDN LENDFPPVVT1440
 1441 RMAKGSAQTA QDNFVKFLQS FFKKAESDAG GSQGSPSGSG VQRWAGQVKQ ALAANGLSTS1500
 1501 QDMIDRVLRQ ISSESSGNEK AVQGNIGDIN NITGDLAKGL MQTISSTFNA NKFPGHGDIF1560
 1561 NGYDNLLAAL NYAKKNYGPS LSFLGNGHGY ENGGVIDAHG FYEIAEGNRP EMVIPLDPQK1620
 1621 KSRATQLLNQ ANRTINANNY EKNSNNNMEL ALTQAVNLLS QVLGATKEQT TALKNQPAPI1680
 1681 IDENSFFKGA APTIKKTQDS YQNRKNRLGG IMI

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