YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CXA3_SHEEP
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDWSFLGRL LENAQEHSTV IGKVWLTVLF IFRILVLGAA AEEVWGDEQS DFTCNTQQPG  60
   61 CENVCYDRAF PISHVRFWVL QIIFVSTPTL IYLGHVLHLV RMEEKRKERE EEPPKAAGPA 120
  121 EEHQDPAPVR DDRGKVRIAG ALLRTYVFNI IFKTLFEVGF IAGQYFLYGF QLKPLYRCDR 180
  181 WPCPNTVDCF ISRPTEKTIF ILFMLAVACV SLLLNVLEIY HLGWKKLKQG MTSPFRPDTP 240
  241 GSRAGSAKPM GGSPLLLPPN SAPPAVTIGF PPYYAPSASS LGQASAPGYP EPPLPAALPG 300
  301 TPGTPGTPGT LGGGGGNQGL RAPAQNCANR EAEPQTSARK ASPPASTPPA APAGGPQQFL 360
  361 PGGAAGSSGD SDGEGAVTAV ELHAPPEPPA DPGRSSKASK SSGGRARAAD LAI

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	41	0.93
Non-Cytoplasmic	42	76	0.98
Transmembrane Helix	77	99	0.92
Cytoplasmic	100	144	0.96
Transmembrane Helix	145	166	0.80
Non-Cytoplasmic	167	198	0.88
Transmembrane Helix	199	222	0.89
Cytoplasmic	223	413	0.86