YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60491536, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIKTKLLFG IGILAGMIIL LVTLSVVNLQ ILTATEPDSP VAMPALERAL LWISVTGGIC  60
   61 ILTGLVLLIW LPRSINRPVK ELTCGILEIA NHNYEKRLDM RGYEEFREVS DSFNRMAEKL 120
  121 TEYRDSTLAD ILSAKKFLEA VVNSIHEPII GLNTEREILF INNEALNVLN MKRENVIRKS 180
  181 AEELSLKNDL LRRLIRELVT PGEKNEPLKI YADNKESYFQ ASYIPIENAA AEEGEARNLG 240
  241 DVILLKNITE FKELDSAKTT FISTISHELK TPISAIMMSL QLLEDKRVGS LNGEQEQLSK 300
  301 NIRDNSQRLL DITGELLNMT QVEAGKLQMM PKITKPIELI EYAIKANQVQ ADKFNIQIEV 360
  361 DYPQEKIPKL FVDSEKIAWV LTNLLSNAIR YSKENGRVVI GVRHKKEYIE LYVQDFGKGI 420
  421 DPRYHQSIFD RYFRVPGTKV QGSGLGLSIS KDFVEAHGGT LTVQSEPGKG SCFVIRLKA

Type	Start	End	Confidence
Cytoplasmic	1	6	0.78
Transmembrane Helix	7	32	0.86
Non-Cytoplasmic	33	48	0.76
Transmembrane Helix	49	71	0.94
Cytoplasmic	72	479	0.79