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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|113534154, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.44
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTVPALIA DDLPTNVTSQ ITDAARPKTT SSVVCYSPMM ITTNGIWQGV NPLEFSLPLF  60
   61 ILQVAVIVVT TRLLVVLLKP FRQPRVIAEI LAGVVLGPSV MGQVEVWATM VFPQRSLLTL 120
  121 ETVAHLGLLY FLFLVGLEMD LDVIRRSGKK ALFVAVAGMA LPFCIGIATS FIFRHQVSRN 180
  181 VHQTSFLLFL GVALSVTAFP VLARILAEIK LLNTELGRIA MSAAIVNDMC AWILLALAIA 240
  241 ISEVNSTALS SLWVLLAGVL FVLFCFYVVR PGMWWLIRRI PEGEVVSDMQ VSLILTGVML 300
  301 AGVCTDAIGI HSVFGAFVYG LVIPGGQLGV ALIEKLEDFV TGLLLPLFFA ISGLRTNISK 360
  361 IRDPITVGLL VLVFTMASFA KIMGTIIIAA LYTMPFREGI ALGFLMNTRG LVEMIVLNIG 420
  421 RDKEVLDDES FAVMVLVSVA MTTLVTPVVT GVYRPSRRLV GYKRRNLQRI RHDSELRMLI 480
  481 CVHTTRNVPS VLSLLELSNP TKRSPIFIYA LHLVELTGRA SNMLAAAAAS ASKQNRSSSS 540
  541 STLPPVTEHI FNAFENYERH TGGISIQTLA AVSPYQTMHD DVSVLAEDKH VSLIVVPFHK 600
  601 QQTVDGAMEP INPSIRGFNE SLLSTSPCSV AILVDRGLSA AAARMAALHR VALFFFGGPD 660
  661 DREALAYAWR MVEHPGVALT VVRFVPPDYR VRSYSNTNYR SVASDADPRS IGIDTEGKTE 720
  721 LQMDEEYLGD FRTRNIGNDA ISYSDKVVAN SEETVSAIRN MDDSLHELYI VGRRPGEAGS 780
  781 PMTASLEDWM ECPELGPIGD MLVSSDFSMS VSVLVVQQYV VAAAAPAPAT TAPAGNADPV 840
  841 RQYVSNANQR PSAAYRTSAA STANSRWSGG GTVGF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle