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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|18030088
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.91
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRLRAERQ RSPAPRPSVL LLILSAMLLA SPRAGGQNVD NKLESLRQQM LKDQSKDYEI  60
   61 TVPFLLNGEQ WRPANSIYSK DHPSLLQLVV QVEGERLVIH LERNEGLLAS SFTETHYLKD 120
  121 GTDVVLSRNY TGHCYYHGNV RGYPSSSVSL NTCSGLKGII MLGNKNYVLE PIERATSEHK 180
  181 IYRAENLEII PGSCGHQLDI SAMRAADASH RSQAGRYKRE TLKTTKYVEL VIVADNREFQ 240
  241 RQGKDVEKIK QRLIEIANYV DKFYRPLNIR VALVGVEVWN DMDKCSISQD PFTSLHESLD 300
  301 WRKLKLLPRK PHDNAQLISG VYFQGTTIGM APIMSMCTAE QSGGVVMDHS ENPLGAAVTL 360
  361 AHELGHNFGM NHDTLERGCN CKASTDKGGC IMNPSTGYPF PMVFSSCSRK DLENSLEKGV 420
  421 GMCLFNLPEV KESFGGQKCR ELATVEDGEE CDWGSPDECT NRCCNATTCT LRPGAVCAHG 480
  481 LCCEDCKLKP AGISCRESSN SCDLPEFCTG ASPHCPANVY LHDGHACHGV DGYCYNGICQ 540
  541 THEQQCITLW GQGAKPAPGI CFERVNSAGD PYGNCGKDSK SSFAKCEPRD AKCGKIQCQG 600
  601 GANRPVIGTN AVSIETNIPL QEGGKILCRG THVYLGDDMP DPGLVLSGTK CEDGKICLNR 660
  661 RCQNTSVFGV HKCATKCHGR GVCNNKKNCH CEADWAPPYC DKPGFGGSVD SGPIRQADNK 720
  721 SLTVGVLITI LCLTFAGSVM YLKRKTLMRL LFTSKKTTIE KLRSVSPARS SRSSKPNHIR 780
  781 TASLSKNLIM KPQNTNMQKR DGPRRPLPYQ IVDISDPVKT DHVPQPKTPH RVLPPLPQPP 840
  841 CHQAGPESAS CNPTLRLSQE NHKPSPPRKP LPADPLNKAR YNTHVLSRLG LTKAPPHVAP 900
  901 ARPAPKHPPP VPRSSNAAAD VK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle