YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7649310
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANKEVDVPE TKDTQFTAKD YTDPPPAPLF DMGELTKWSL YRAVIAEFVA TLLFLYITVA  60
   61 TVIGYSHQSD ATIPGNTDAH CSGVGVLGIA WAFGGMIFVL VYCTAGISGG HINPAVTFGL 120
  121 FLARKVSLIR ALLYMIAQCL GAICGVGFVK AFQSAYYSRY GGGANTLNAG YSKGTGLAAE 180
  181 IIGTFVLVYT VFAATDPKRS ARDSHVPVLA PLPIGFAVFM VHLATIPITG TGINPARSFG 240
  241 AAVIYNKDKA WDDQWIFWVG PFIGAAIAAA YHQYVLRAGA VKALGSFGSN A

Type	Start	End	Confidence
Cytoplasmic	1	42	0.95
Transmembrane Helix	43	65	0.87
Non-Cytoplasmic	66	88	0.86
Transmembrane Helix	89	112	0.84
Cytoplasmic	113	130	0.81
Transmembrane Helix	131	152	0.93
Non-Cytoplasmic	153	173	0.89
Transmembrane Helix	174	193	0.93
Cytoplasmic	194	205	0.86
Transmembrane Helix	206	226	0.89
Non-Cytoplasmic	227	254	0.87
Transmembrane Helix	255	275	0.93
Cytoplasmic	276	291	0.93