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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28268680
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNSENHHPH HHHHHSDTEI IGNDRASYSG PLSGPLNKRG GKKSARFNIP ESTDIGTSVG  60
   61 TAGGKSNDDA YVEITLDVRE DSVAVHSVKT AGGDDVEDPE LALLAKGLEK KSALGSSLVR 120
  121 NASSRIRQVS QELRRLASLN KRPIPTGRFD RNKSAAAHAL KGLKFISKTD GGAGWPAVEK 180
  181 RFDEITASTT GLLPRAKFGE CIGMNKESKE FAVELYDALA RRRNITTDSI NKAQLKEFWD 240
  241 QVADQSFDSR LQTFFDMVDK DADGRITEEE VREIIGLSAS ANRLSTIQKQ ADEYAAMIME 300
  301 ELDPNNLGYI MIENLEMLLL QAPNQSVQRG GESRNLSQML SQKLKHTRER NPIVRWYKSF 360
  361 MYFLQDNWQR VWVLLLWIGI MAGLFTWKYI QYKEKAAYEV MGPCVCFAKG AAETLKLNMA 420
  421 IILFPVCRNT ITWLRNKTRL GVAVPFDDNL NFHKVIAVAI ALGVGVHGLA HLTCDFPRLL 480
  481 NASEEEYEPM KHYFGDQPES YWWFIKGVEG VTGIIMVVLM AIAFTLATPW FRRNRVSLPK 540
  541 PFHKLTGFNA FWYSHHLFVI VYTLFIVHGE KLYITKDWYK RTTWMYLTIP IILYASERLI 600
  601 RAFRSSIKAV KILKVAVYPG NVLALHMSKP QGYKYKSGQY MFVNCAAVSP FEWHPFSITS 660
  661 APGDDYLSVH IRTLGDWTRQ LKTVFSEVCQ PPPNGKSGLL RADYLQGENN PNFPRVLIDG 720
  721 PYGAPAQDYK KYEVVLLVGL GIGATPMISI VKDIVNNMKA MDEEENSLED GHNNNMAPNS 780
  781 SPNIAKNKGN KSGSASGRNN FNTRRAYFYW VTREQGSFDW FKGIMNEAAE MDHKGVIEMH 840
  841 NYCTSVYEEG DARSALITML QSLHHAKNGV DIVSGTRVKS HFAKPNWRNV YKRIALNHPE 900
  901 AKVGVFYCGA PALTKELRQH ALDFSHKTST KFDFHKENF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle