YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OP1S1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAWAVQFGN ASKVSPFEGE QYHIAPKWAF YLQAAFMGFV FIVGTPMNGI VLFVTMKYKK  60
   61 LRQPLNYILV NISLAGFIFD TFSVSQVFVC AARGYYFLGY TLCAMEAAMG SIAGLVTGWS 120
  121 LAVLAFERYV VICKPFGSFK FGQGQAVGAV VFTWIIGTAC ATPPFFGWSR YIPEGLGTAC 180
  181 GPDWYTKSEE YNSESYTYFL LITCFMMPMT IIIFSYSQLL GALRAVAAQQ AESESTQKAE 240
  241 REVSRMVVVM VGSFVLCYAP YAVTAMYFAN SDEPNKDYRL VAIPAFFSKS SCVYNPLIYA 300
  301 FMNKQFNACI METVFGKKID ESSEVSSKTE TSSVSA

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.96
Transmembrane Helix	32	55	0.90
Cytoplasmic	56	66	0.86
Transmembrane Helix	67	89	0.86
Non-Cytoplasmic	90	103	0.72
Transmembrane Helix	104	126	0.85
Cytoplasmic	127	145	0.79
Transmembrane Helix	146	166	0.90
Non-Cytoplasmic	167	197	0.94
Transmembrane Helix	198	220	0.87
Cytoplasmic	221	245	0.88
Transmembrane Helix	246	265	0.88
Non-Cytoplasmic	266	336	0.61