YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7629493
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	55	0.96
Transmembrane Helix	56	71	0.92
Non-Cytoplasmic	72	87	0.77
Transmembrane Helix	88	109	0.88
Cytoplasmic	110	132	0.82
Transmembrane Helix	133	153	0.66
Non-Cytoplasmic	154	165	0.57
Transmembrane Helix	166	185	0.92
Cytoplasmic	186	280	0.60
Transmembrane Helix	281	305	0.85
Non-Cytoplasmic	306	345	0.92
Transmembrane Helix	346	369	0.71
Cytoplasmic	370	397	0.77
Transmembrane Helix	398	415	0.96
Non-Cytoplasmic	416	433	0.84
Transmembrane Helix	434	453	0.90
Cytoplasmic	454	463	0.68
Transmembrane Helix	464	487	0.85
Non-Cytoplasmic	488	494	0.78
Transmembrane Helix	495	521	0.80
Cytoplasmic	522	546	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTERDGDVL EESVQEPDLY SPVSPLPQDQ AISTYFEEKV PIPEDDRAKM FSFRKLWAFT  60
   61 GPGFLMSIAY LDPGNIESDL QSGAKAGFKL LWVLLGSTII GLLLQRLAAR LGVVTGMHLA 120
  121 EVCNRHYPTV PRIILWLMVE LAIIGSDMQE VIGCAIAFNL LSVGRIPLWA GVLITIIDTF 180
  181 VFLFLDKYGL KKLEAFFGFL IPIMAISFRY KYVRVAPDQA EVLKGMFLPY CSGCGAEQLK 240
  241 QAVGIVGAVI MPHNVYLHSA LVKSRDVDRG NKKEVKEANK YYFIESTIAL FVSFLINVFV 300
  301 VAVFAEAFYD KTNIEVNAKC NASGSPHTDL FPLDNSTLQV DIFKGGVVLG CFFGPAALYI 360
  361 WAIGILAAGQ SSTMTGTYSG QFVMEGFLNL RWSRFARVLL TRSIAIFPLS WVAVFQDVRH 420
  421 LTSMNDFLNV LQSMQLPLAL IPILTFTSLT SLMNDFANGL VWKISGGVLI LLVCAINMYF 480
  481 VVVYVTALNS TVLYVFSALL SIAYLSFVIY LVWICLIALG VSRLDFTGSV RFPPAVLIDE 540
  541 QPEFDS